Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060263.seq
         (642 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236124-1|AAF68382.1|  107|Anopheles gambiae thioredoxin 1 prot...    37   6e-04
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    26   0.88 
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    26   1.2  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    25   2.7  
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           24   3.6  
AY301275-1|AAQ67361.1|  611|Anopheles gambiae G-protein coupled ...    24   4.7  
AJ439353-2|CAD27924.1|  612|Anopheles gambiae putative G-protein...    24   4.7  

>AF236124-1|AAF68382.1|  107|Anopheles gambiae thioredoxin 1
           protein.
          Length = 107

 Score = 36.7 bits (81), Expect = 6e-04
 Identities = 18/74 (24%), Positives = 37/74 (50%)
 Frame = +1

Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAGQLLNVV 441
           WCGPC  +   L++ + +     + + +   +  E   ++   S PT++FI   +++   
Sbjct: 31  WCGPCKVIAPKLEEFQNKYADKIVVVKVDVDECEELAAQYNIASMPTFLFIKRKEVVGQF 90

Query: 442 FGADAPRLARTIEQ 483
            GA+A +L   I+Q
Sbjct: 91  SGANAEKLENFIQQ 104


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 26.2 bits (55), Expect = 0.88
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 478 EQELQNEELAKKEKENDLKEPLMNLRLLSRKLAEAQRE 591
           EQEL+  ++   EKE +L++       + RK  E  RE
Sbjct: 327 EQELERLKITIAEKEKELEQVRPRYEAMRRKEEECSRE 364


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +1

Query: 460 RLARTIEQELQNEELAKKEKENDL 531
           R A T+ QEL+NE + +KE EN+L
Sbjct: 596 RYANTL-QELRNEMVMQKEGENEL 618


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +1

Query: 478 EQELQNEELAKKEKENDLKEPLMNLRLLSRKLAEAQRE 591
           +QEL   E  K+E +  LKE    +  ++R++A+ ++E
Sbjct: 256 QQELNIIEKRKEEADEVLKEKKKEVGKMTREMAKKEQE 293



 Score = 23.8 bits (49), Expect = 4.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 472 TIEQELQNEELAKKEKENDLKEPLMNLRLLSRKLAEAQRE 591
           T+E +++  E   K   NDL+    N+    R+L +  RE
Sbjct: 713 TVESQIRGLENRLKYSMNDLETSKKNINEYDRQLEDFTRE 752


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 79   LRHLFGHDATGTRSD 123
            LR LFGHDA  + SD
Sbjct: 1171 LRALFGHDAWSSESD 1185


>AY301275-1|AAQ67361.1|  611|Anopheles gambiae G-protein coupled
           receptor protein.
          Length = 611

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 297 EVPNHPDAGSTPFGDTSITKSPSLLMNLFH 208
           +V + P   STPF + S  ++ SL   L H
Sbjct: 83  QVQHQPQPPSTPFANVSTGQNESLANLLLH 112


>AJ439353-2|CAD27924.1|  612|Anopheles gambiae putative G-protein
           coupled receptor protein.
          Length = 612

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 297 EVPNHPDAGSTPFGDTSITKSPSLLMNLFH 208
           +V + P   STPF + S  ++ SL   L H
Sbjct: 84  QVQHQPQPPSTPFANVSTGQNESLANLLLH 113


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 647,515
Number of Sequences: 2352
Number of extensions: 13269
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63141405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)