Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060263.seq
(642 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81552-7|CAB04487.2| 606|Caenorhabditis elegans Hypothetical pr... 35 0.057
AL117201-5|CAB57916.1| 606|Caenorhabditis elegans Hypothetical ... 35 0.057
AF068720-8|AAM15583.1| 142|Caenorhabditis elegans Hypothetical ... 33 0.13
AF106589-2|AAC78230.1| 107|Caenorhabditis elegans Hypothetical ... 30 1.2
U80027-5|AAC48123.1| 122|Caenorhabditis elegans Hypothetical pr... 29 2.1
U80029-11|AAB37590.1| 155|Caenorhabditis elegans Hypothetical p... 29 2.8
Z98866-5|CAB11548.1| 436|Caenorhabditis elegans Hypothetical pr... 29 3.7
AF143900-1|AAF66677.1| 284|Caenorhabditis elegans thioredoxin-l... 29 3.7
AF143405-1|AAF66636.1| 284|Caenorhabditis elegans thioredoxin-l... 29 3.7
AC024810-17|AAF60759.1| 284|Caenorhabditis elegans Hypothetical... 29 3.7
U41542-8|AAN39682.1| 437|Caenorhabditis elegans Protein disulfi... 28 4.9
U41542-7|ABO16445.1| 371|Caenorhabditis elegans Protein disulfi... 28 4.9
U41542-6|AAK39152.1| 493|Caenorhabditis elegans Protein disulfi... 28 4.9
U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing facto... 28 4.9
U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing facto... 28 4.9
U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor... 28 4.9
U06933-1|AAA64938.1| 551|Caenorhabditis elegans CeSWAP protein. 28 4.9
U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein. 28 4.9
>Z81552-7|CAB04487.2| 606|Caenorhabditis elegans Hypothetical
protein F56G4.5 protein.
Length = 606
Score = 34.7 bits (76), Expect = 0.057
Identities = 19/74 (25%), Positives = 36/74 (48%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAGQLLNVV 441
WCGPC + ++ E G L + + ++R+ + PT++F+ Q +++V
Sbjct: 33 WCGPCRMISPIFEQFSAEYGNATF-LKVNCDVARDIVQRYNISAMPTFIFLKNRQQVDMV 91
Query: 442 FGADAPRLARTIEQ 483
GA+ +A I Q
Sbjct: 92 RGANQQAIAEKIRQ 105
>AL117201-5|CAB57916.1| 606|Caenorhabditis elegans Hypothetical
protein F56G4.5 protein.
Length = 606
Score = 34.7 bits (76), Expect = 0.057
Identities = 19/74 (25%), Positives = 36/74 (48%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAGQLLNVV 441
WCGPC + ++ E G L + + ++R+ + PT++F+ Q +++V
Sbjct: 33 WCGPCRMISPIFEQFSAEYGNATF-LKVNCDVARDIVQRYNISAMPTFIFLKNRQQVDMV 91
Query: 442 FGADAPRLARTIEQ 483
GA+ +A I Q
Sbjct: 92 RGANQQAIAEKIRQ 105
>AF068720-8|AAM15583.1| 142|Caenorhabditis elegans Hypothetical
protein K02H11.6 protein.
Length = 142
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIEC-LKRFRKRSEPTWMFIAAG 423
WCGPC LK E+ D+ + A SD E LK + + W +I G
Sbjct: 36 WCGPCRNFTPVLKDFYEEV-QDDFEIVFASSDQSESDLKNYMEECHGNWYYIPFG 89
>AF106589-2|AAC78230.1| 107|Caenorhabditis elegans Hypothetical
protein Y44E3A.3 protein.
Length = 107
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIEC---LKRFRKRSEPTWMFIAAGQLL 432
WCGPC + ++++ E L+I K D EC + + S PT++ I G
Sbjct: 31 WCGPCQMIKPRVEELAAE---HKDRLSILKIDVDECDGVGEEYEINSMPTFLLIVDGIKK 87
Query: 433 NVVFGADAPRLARTIEQELQ 492
+ GA+ + ++ LQ
Sbjct: 88 DQFSGANNTKFEEMVKAALQ 107
>U80027-5|AAC48123.1| 122|Caenorhabditis elegans Hypothetical
protein T28A11.13 protein.
Length = 122
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIEC-LKRFRKRSEPTWMFIAAG 423
WC PC LKK E D+ + SD E LK++ + W +I G
Sbjct: 26 WCPPCCMFTPILKKF-YEKVYDDFEIVFVSSDPSESGLKKYMQECHGDWYYIPFG 79
>U80029-11|AAB37590.1| 155|Caenorhabditis elegans Hypothetical
protein T20D4.7 protein.
Length = 155
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIEC-LKRFRKRSEPTWMFIAAG 423
WC PC G LK E+ + + SD E LK + K W I G
Sbjct: 50 WCPPCRGFTPILKDFYEEV-NEEFEIVFVSSDRSESDLKMYMKECHGDWYHIPHG 103
>Z98866-5|CAB11548.1| 436|Caenorhabditis elegans Hypothetical
protein Y49E10.4 protein.
Length = 436
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAG 423
WCG C + KK E+GG A+ + ++F R PT F A G
Sbjct: 183 WCGHCQKLEPEWKKAAEEMGGRVKFGALDATAHESIAQKFGIRGFPTIKFFAPG 236
>AF143900-1|AAF66677.1| 284|Caenorhabditis elegans thioredoxin-like
protein protein.
Length = 284
Score = 28.7 bits (61), Expect = 3.7
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKR---SEPTWMFIAAGQLL 432
WCGPC + + L L K D C K + S PT+M +G +
Sbjct: 32 WCGPCKMIAPTFEA----LSNQYLGAVFLKVDVEICEKTSSENGVNSMPTFMVFQSGVRV 87
Query: 433 NVVFGADAPRLARTIEQELQN 495
+ GADA L +++ N
Sbjct: 88 EQMKGADAKALETMVKKYADN 108
>AF143405-1|AAF66636.1| 284|Caenorhabditis elegans thioredoxin-like
protein TXL protein.
Length = 284
Score = 28.7 bits (61), Expect = 3.7
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKR---SEPTWMFIAAGQLL 432
WCGPC + + L L K D C K + S PT+M +G +
Sbjct: 32 WCGPCKMIAPTFEA----LSNQYLGAVFLKVDVEICEKTSSENGVNSMPTFMVFQSGVRV 87
Query: 433 NVVFGADAPRLARTIEQELQN 495
+ GADA L +++ N
Sbjct: 88 EQMKGADAKALETMVKKYADN 108
>AC024810-17|AAF60759.1| 284|Caenorhabditis elegans Hypothetical
protein Y54E10A.3 protein.
Length = 284
Score = 28.7 bits (61), Expect = 3.7
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKR---SEPTWMFIAAGQLL 432
WCGPC + + L L K D C K + S PT+M +G +
Sbjct: 32 WCGPCKMIAPTFEA----LSNQYLGAVFLKVDVEICEKTSSENGVNSMPTFMVFQSGVRV 87
Query: 433 NVVFGADAPRLARTIEQELQN 495
+ GADA L +++ N
Sbjct: 88 EQMKGADAKALETMVKKYADN 108
>U41542-8|AAN39682.1| 437|Caenorhabditis elegans Protein disulfide
isomerase protein2, isoform b protein.
Length = 437
Score = 28.3 bits (60), Expect = 4.9
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSD-TIECLKRFRKRSEPTWMFIAAGQLLNV 438
WCG C + K+ E D+ + IAK D T+ ++ + +S PT F AG V
Sbjct: 336 WCGHCKQLAPTWDKLG-EKFADDESIVIAKMDSTLNEVEDVKIQSFPTIKFFPAGSNKVV 394
Query: 439 VFGADAPRLARTIEQELQNEELAKKEKENDLKE 537
+ D T E +E A +E +E
Sbjct: 395 DYTGDRTIEGFTKFLETNGKEGAGASEEEKAEE 427
>U41542-7|ABO16445.1| 371|Caenorhabditis elegans Protein disulfide
isomerase protein2, isoform c protein.
Length = 371
Score = 28.3 bits (60), Expect = 4.9
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSD-TIECLKRFRKRSEPTWMFIAAGQLLNV 438
WCG C + K+ E D+ + IAK D T+ ++ + +S PT F AG V
Sbjct: 270 WCGHCKQLAPTWDKLG-EKFADDESIVIAKMDSTLNEVEDVKIQSFPTIKFFPAGSNKVV 328
Query: 439 VFGADAPRLARTIEQELQNEELAKKEKENDLKE 537
+ D T E +E A +E +E
Sbjct: 329 DYTGDRTIEGFTKFLETNGKEGAGASEEEKAEE 361
>U41542-6|AAK39152.1| 493|Caenorhabditis elegans Protein disulfide
isomerase protein2, isoform a protein.
Length = 493
Score = 28.3 bits (60), Expect = 4.9
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSD-TIECLKRFRKRSEPTWMFIAAGQLLNV 438
WCG C + K+ E D+ + IAK D T+ ++ + +S PT F AG V
Sbjct: 392 WCGHCKQLAPTWDKLG-EKFADDESIVIAKMDSTLNEVEDVKIQSFPTIKFFPAGSNKVV 450
Query: 439 VFGADAPRLARTIEQELQNEELAKKEKENDLKE 537
+ D T E +E A +E +E
Sbjct: 451 DYTGDRTIEGFTKFLETNGKEGAGASEEEKAEE 483
>U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
b protein.
Length = 663
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 448 ADAPRLARTIEQELQNEELAKKEKEND-LKEP 540
A R A +E+ N E AKKEKEND L +P
Sbjct: 244 AHVTRQAAGVEEVKMNVEEAKKEKENDHLDDP 275
>U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
a protein.
Length = 749
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 448 ADAPRLARTIEQELQNEELAKKEKEND-LKEP 540
A R A +E+ N E AKKEKEND L +P
Sbjct: 328 AHVTRQAAGVEEVKMNVEEAKKEKENDHLDDP 359
>U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
d protein.
Length = 751
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 448 ADAPRLARTIEQELQNEELAKKEKEND-LKEP 540
A R A +E+ N E AKKEKEND L +P
Sbjct: 332 AHVTRQAAGVEEVKMNVEEAKKEKENDHLDDP 363
>U06933-1|AAA64938.1| 551|Caenorhabditis elegans CeSWAP protein.
Length = 551
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 448 ADAPRLARTIEQELQNEELAKKEKEND-LKEP 540
A R A +E+ N E AKKEKEND L +P
Sbjct: 328 AHVTRQAAGVEEVKMNVEEAKKEKENDHLDDP 359
>U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein.
Length = 749
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 448 ADAPRLARTIEQELQNEELAKKEKEND-LKEP 540
A R A +E+ N E AKKEKEND L +P
Sbjct: 328 AHVTRQAAGVEEVKMNVEEAKKEKENDHLDDP 359
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,385,796
Number of Sequences: 27780
Number of extensions: 309008
Number of successful extensions: 915
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -