Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060263.seq
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.7  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 164 PSCHKL*PWVYFVLSDRVP 108
           PS HK+ PWV  +   R+P
Sbjct: 327 PSTHKMAPWVRKIFIRRLP 345


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 358 YLT*RWRGAGCLHLTPL 308
           Y++  W GA C+ L PL
Sbjct: 161 YVSLVWLGAACISLPPL 177


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +1

Query: 469 RTIEQELQNEELAKKEKENDLKEPLMNLRLLSRKLAEAQREAC 597
           RTIE E  N          D +   MNL + +R  +     AC
Sbjct: 443 RTIENEQLNRMYKSYPNYIDKETKDMNLEISTRPKSNTVENAC 485


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 51  ASVITCTALSSPPFWSRRDGD--TVGQDKINP 140
           A V TC+A +     +RR GD   +   KI+P
Sbjct: 584 AGVYTCSARNKQGHSARRSGDVAVIVPPKISP 615


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,416
Number of Sequences: 438
Number of extensions: 3801
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)