Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060263.seq
(642 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g06730.1 68416.m00798 thioredoxin family protein contains Pfa... 37 0.010
At1g52990.1 68414.m05997 thioredoxin family protein similar to S... 37 0.010
At1g59730.1 68414.m06725 thioredoxin, putative similar to SP|Q38... 36 0.030
At3g51030.1 68416.m05587 thioredoxin H-type 1 (TRX-H-1) identica... 35 0.040
At3g15360.1 68416.m01948 thioredoxin M-type 4, chloroplast (TRX-... 33 0.21
At1g43560.1 68414.m05000 thioredoxin family protein contains Pfa... 31 0.49
At3g53220.1 68416.m05864 thioredoxin family protein low similari... 31 0.65
At1g19730.1 68414.m02465 thioredoxin H-type 4 (TRX-H-4) (GREN) i... 31 0.65
At3g08710.1 68416.m01012 thioredoxin family protein similar to t... 31 0.86
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha... 31 0.86
At5g16400.1 68418.m01917 thioredoxin, putative similar to SP|P29... 30 1.5
At1g77510.1 68414.m09026 protein disulfide isomerase, putative s... 30 1.5
At5g60640.2 68418.m07611 thioredoxin family protein similar to p... 29 2.0
At5g60640.1 68418.m07610 thioredoxin family protein similar to p... 29 2.0
At3g02730.1 68416.m00265 thioredoxin, putative similar to SP|P29... 29 2.6
At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to te... 29 3.5
At5g39950.1 68418.m04844 thioredoxin H-type 2 (TRX-H-2) (Gif2) i... 28 4.6
At4g36080.1 68417.m05136 FAT domain-containing protein / phospha... 28 4.6
At1g76760.1 68414.m08933 thioredoxin family protein similar to t... 28 4.6
At1g69880.1 68414.m08042 thioredoxin, putative similar to SP|Q38... 28 4.6
At2g35010.1 68415.m04295 thioredoxin family protein similar to S... 28 6.1
At2g34260.2 68415.m04192 transducin family protein / WD-40 repea... 28 6.1
At2g34260.1 68415.m04191 transducin family protein / WD-40 repea... 28 6.1
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli... 28 6.1
At1g03090.2 68414.m00284 methylcrotonyl-CoA carboxylase alpha ch... 28 6.1
At1g03090.1 68414.m00283 methylcrotonyl-CoA carboxylase alpha ch... 28 6.1
At3g02860.2 68416.m00279 expressed protein 27 8.0
At3g02860.1 68416.m00278 expressed protein 27 8.0
>At3g06730.1 68416.m00798 thioredoxin family protein contains Pfam
profile: PF00085 Thioredoxin
Length = 183
Score = 37.1 bits (82), Expect = 0.010
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKRSEPTWMFIA 417
WCGPCI M L+ + VE + + + + D E + + R PT FI+
Sbjct: 105 WCGPCILMAQELEMLAVEYESNAIIVKVDTDDEYEFARDMQVRGLPTLFFIS 156
>At1g52990.1 68414.m05997 thioredoxin family protein similar to
SP|P48384 Thioredoxin M-type, chloroplast precursor
(TRX-M) {Pisum sativum}; contains Pfam profile PF00085:
Thioredoxin
Length = 313
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/74 (27%), Positives = 32/74 (43%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAGQLLNVV 441
WCGPC M+ L K+ E + + I +RF PT + G+ + V
Sbjct: 238 WCGPCRDMIPILNKMDSEYKNEFKFYTVNFDTEIRFTERFDISYLPTTLVFKGGEQMAKV 297
Query: 442 FGADAPRLARTIEQ 483
GAD +L +++
Sbjct: 298 TGADPKKLRELVKK 311
>At1g59730.1 68414.m06725 thioredoxin, putative similar to SP|Q38879
Thioredoxin H-type 2 (TRX-H-2) {Arabidopsis thaliana};
contains Pfam profile: PF00085 Thioredoxin
Length = 129
Score = 35.5 bits (78), Expect = 0.030
Identities = 18/74 (24%), Positives = 36/74 (48%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAGQLLNVV 441
WCGPC M +++I + + + + ++ +R + P ++F+ G+ ++ V
Sbjct: 54 WCGPCKAMEPRVREIASKY-SEAVFARVDVDRLMDVAGTYRAITLPAFVFVKRGEEIDRV 112
Query: 442 FGADAPRLARTIEQ 483
GA L + IEQ
Sbjct: 113 VGAKPDELVKKIEQ 126
>At3g51030.1 68416.m05587 thioredoxin H-type 1 (TRX-H-1) identical
to SP|P29448 Thioredoxin H-type 1 (TRX-H-1) {Arabidopsis
thaliana}
Length = 114
Score = 35.1 bits (77), Expect = 0.040
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAGQLLNVV 441
WCGPC + + +L + L L + + + ++ PT+MF+ G++L+ V
Sbjct: 39 WCGPCRFIAPFFADLAKKLP-NVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKV 97
Query: 442 FGADAPRLARTIEQEL 489
GA L TI + L
Sbjct: 98 VGAKKDELQSTIAKHL 113
>At3g15360.1 68416.m01948 thioredoxin M-type 4, chloroplast (TRX-M4)
nearly identical to SP|Q9SEU6 Thioredoxin M-type 4,
chloroplast precursor (TRX-M4) {Arabidopsis thaliana}
Length = 193
Score = 32.7 bits (71), Expect = 0.21
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAGQLLNVV 441
WCGPC + + ++ + G I ++ R+ RS PT + G+ + +
Sbjct: 115 WCGPCRMIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPTVIIFKGGEKKDSI 174
Query: 442 FGADAPR--LARTIEQEL 489
GA PR L +TIE+ L
Sbjct: 175 IGA-VPRETLEKTIERFL 191
>At1g43560.1 68414.m05000 thioredoxin family protein contains Pfam
profile: PF00085 Thioredoxin; similar to thioredoxin
GI:142153 from [Synechococcus PCC6301]
Length = 167
Score = 31.5 bits (68), Expect = 0.49
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIE---CLKRFRKRSEPTWMFIAAGQLL 432
WCGPC MV L ++ L +A+ K DT + +++ + PT++ G+L
Sbjct: 87 WCGPCQLMVPILNEVSETLKD---IIAVVKIDTEKYPSLANKYQIEALPTFILFKDGKLW 143
Query: 433 NVVFGA-DAPRLARTIEQELQ 492
+ GA A +L IE LQ
Sbjct: 144 DRFEGALPANQLVERIENSLQ 164
>At3g53220.1 68416.m05864 thioredoxin family protein low similarity
to SP|P29451 Thioredoxin [Rhesus macaque] {Macaca
mulatta}; contains Pfam profile: PF00085 Thioredoxin
Length = 126
Score = 31.1 bits (67), Expect = 0.65
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRK-RSEPTWMFIAAGQLLNV 438
WCG C ++ +K+ L +D EC + R R PT+ F G+ ++
Sbjct: 54 WCGVCSQILPAFRKLSNSFS----KLKFVYADIDECPETTRHIRYTPTFQFYRDGEKVDE 109
Query: 439 VFGADAPRL 465
+FGA RL
Sbjct: 110 MFGAGEQRL 118
>At1g19730.1 68414.m02465 thioredoxin H-type 4 (TRX-H-4) (GREN)
identical to SP|Q39239 Thioredoxin H-type 4 (TRX-H-4)
{Arabidopsis thaliana}
Length = 119
Score = 31.1 bits (67), Expect = 0.65
Identities = 16/72 (22%), Positives = 31/72 (43%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAGQLLNVV 441
WC PC + + + + + + K F + PT++FI AG++++ +
Sbjct: 39 WCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKL 98
Query: 442 FGADAPRLARTI 477
GA+ L I
Sbjct: 99 VGANKEDLQAKI 110
>At3g08710.1 68416.m01012 thioredoxin family protein similar to
thioredoxin H-type GB:P29448 SP|P29448 [Arabidopsis
thaliana], Thioredoxin H-type 2 (TRX-H2) SP|Q07090
{Nicotiana tabacum}; contains Pfam profile: PF00085
Thioredoxin
Length = 140
Score = 30.7 bits (66), Expect = 0.86
Identities = 16/72 (22%), Positives = 33/72 (45%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAGQLLNVV 441
WCGPC + ++ E + L + + + + ++ PT+ F+ GQ + +
Sbjct: 56 WCGPCKIVAPFFIELS-EKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKL 114
Query: 442 FGADAPRLARTI 477
GA+ P L + +
Sbjct: 115 VGANKPELQKKV 126
>At2g17930.1 68415.m02076 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
contains Pfam profiles PF02259 FAT domain, PF00454
Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
domain
Length = 3795
Score = 30.7 bits (66), Expect = 0.86
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = -2
Query: 416 AMNIQVGSLLFLNRFKHSIVSDLAMARCRLSPPNSTLIFLRFPTIPMQGPHHSV 255
A+N+ +LLFL R KH +D+ MAR N+++I T P+ PH SV
Sbjct: 996 ALNVFAETLLFLARVKH---ADVLMAR---GGHNASMIVSSPSTNPVYSPHPSV 1043
>At5g16400.1 68418.m01917 thioredoxin, putative similar to SP|P29450
Thioredoxin F-type, chloroplast precursor (TRX-F) {Pisum
sativum}; contains Pfam profile: PF00085 Thioredoxin
Length = 185
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +1
Query: 256 TEWCGPCIGMVGNLKKIKVELGGDNLHLAI-AKSDTIECLKRFRKRSEPTWMFIAAGQLL 432
T+WCGPC + K++ E D + L + D K R PT+ + +++
Sbjct: 106 TQWCGPCKVIAPKYKELS-EKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVV 164
Query: 433 NVVFGADAPRLARTIE 480
V GA L IE
Sbjct: 165 KEVTGAKYEDLLAAIE 180
>At1g77510.1 68414.m09026 protein disulfide isomerase, putative
similar to protein disulfide isomerase precursor
GB:P29828 GI:4704766 [Medicago sativa]; Pfam HMM hit:
PF00085 Thioredoxins
Length = 508
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIE 366
WCG C + +K EL N LA+AK D E
Sbjct: 57 WCGHCQKLAPEYEKAASELSSHNPPLALAKIDASE 91
>At5g60640.2 68418.m07611 thioredoxin family protein similar to
protein disulfide isomerase GI:5902592 from [Volvox
carteri f. nagariensis], GI:2708314 from Chlamydomonas
reinhardtii; contains Pfam profile: PF00085 Thioredoxin
Length = 536
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLA-IAKSDTIECLKRFRKRSEPTWMFIAAGQ 426
WCG C + EL D + LA I ++ E + +R + PT +F G+
Sbjct: 131 WCGHCQSLAPEYAAAATELKEDGVVLAKIDATEENELAQEYRVQGFPTLLFFVDGE 186
>At5g60640.1 68418.m07610 thioredoxin family protein similar to
protein disulfide isomerase GI:5902592 from [Volvox
carteri f. nagariensis], GI:2708314 from Chlamydomonas
reinhardtii; contains Pfam profile: PF00085 Thioredoxin
Length = 597
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLA-IAKSDTIECLKRFRKRSEPTWMFIAAGQ 426
WCG C + EL D + LA I ++ E + +R + PT +F G+
Sbjct: 131 WCGHCQSLAPEYAAAATELKEDGVVLAKIDATEENELAQEYRVQGFPTLLFFVDGE 186
>At3g02730.1 68416.m00265 thioredoxin, putative similar to SP|P29450
Thioredoxin F-type, chloroplast precursor (TRX-F) {Pisum
sativum}; contains Pfam profile: PF00085 Thioredoxin
Length = 178
Score = 29.1 bits (62), Expect = 2.6
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Frame = +1
Query: 256 TEWCGPCIGMVGNLKKIKVELGGDNLHLAI-AKSDTIECLKRFRKRSEPTWMFIAAGQLL 432
T+WCGPC + K + E D + L + D K R PT+ + +++
Sbjct: 96 TQWCGPCKVIAPKYKALS-EKYDDVVFLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVV 154
Query: 433 NVVFGADAPRLARTIE 480
V GA L IE
Sbjct: 155 KEVTGAKYDDLVAAIE 170
>At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to
tetratricoredoxin [Arabidopsis thaliana] GI:18041544;
similar to SP|Q42443 Thioredoxin H-type (TRX-H) (Phloem
sap 13 kDa protein-1) {Oryza sativa}; contains Pfam
profile: PF00085 Thioredoxin
Length = 380
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/74 (27%), Positives = 31/74 (41%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAGQLLNVV 441
WCGPC M + + + L + + + S PT+ FI G+ ++ V
Sbjct: 303 WCGPCRYMSPLYSNLATQ-HSRVVFLKVDIDKANDVAASWNISSVPTFCFIRDGKEVDKV 361
Query: 442 FGADAPRLARTIEQ 483
GAD L + I Q
Sbjct: 362 VGADKGSLEQKIAQ 375
>At5g39950.1 68418.m04844 thioredoxin H-type 2 (TRX-H-2) (Gif2)
identical to SP|Q38879 Thioredoxin H-type 2 (TRX-H-2)
{Arabidopsis thaliana}; identical to cDNA (Gif2) mRNA
for thioredoxin GI:992963
Length = 133
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/74 (20%), Positives = 31/74 (41%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAGQLLNVV 441
WCGPC M+ + D + + + + K F + PT++ + G+ + +
Sbjct: 58 WCGPC-RMIEPAIHAMADKFNDVDFVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERI 116
Query: 442 FGADAPRLARTIEQ 483
GA L + + +
Sbjct: 117 IGAKKDELEKKVSK 130
>At4g36080.1 68417.m05136 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
contains Pfam profiles PF00454: Phosphatidylinositol 3-
and 4-kinase, PF02259: FAT domain, PF02260: FATC domain
Length = 3839
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = -2
Query: 416 AMNIQVGSLLFLNRFKHSIVSDLAMARCRLSPPNSTLIFLRFPTIPMQGPHHSV 255
++N+ +LLFL R KH +D+ MAR ++++I T P+ PH SV
Sbjct: 1052 SLNVFAETLLFLARIKH---ADVLMAR---GAHSASMIVSSPSTNPVYSPHPSV 1099
>At1g76760.1 68414.m08933 thioredoxin family protein similar to
thioredoxin CH2, M-type, chloroplast precursor GB:P23400
SP|P23400 [Chlamydomonas reinhardtii]; contains Pfam
profile: PF00085 Thioredoxin
Length = 172
Score = 28.3 bits (60), Expect = 4.6
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAGQLLNVV 441
WCGPC MV L ++ L + I +++ + PT++ G+ +
Sbjct: 92 WCGPCQFMVPILNEVSETLKDKIQVVKIDTEKYPSIANKYKIEALPTFILFKDGEPCDRF 151
Query: 442 FGA-DAPRLARTIEQELQ 492
GA A +L + IE L+
Sbjct: 152 EGALTAKQLIQRIEDSLK 169
>At1g69880.1 68414.m08042 thioredoxin, putative similar to SP|Q38879
Thioredoxin H-type 2 (TRX-H-2) {Arabidopsis thaliana};
contains Pfam profile: PF00085 Thioredoxin
Length = 148
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/79 (21%), Positives = 35/79 (44%)
Frame = +1
Query: 259 EWCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAGQLLNV 438
+WCGPC + L+++ + D + I + F + P +F+ G+ +++
Sbjct: 69 KWCGPCKTLEPKLEELAAKY-TDVEFVKIDVDVLMSVWMEFNLSTLPAIVFMKRGREVDM 127
Query: 439 VFGADAPRLARTIEQELQN 495
V G L R + + Q+
Sbjct: 128 VVGVKVDELERKLNKYTQS 146
>At2g35010.1 68415.m04295 thioredoxin family protein similar to
SP|Q42443 Thioredoxin H-type (TRX-H) {Oryza sativa};
contains Pfam profile: PF00085 Thioredoxin
Length = 194
Score = 27.9 bits (59), Expect = 6.1
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIE-----CLKRFRKRSEPTWMFIAAGQ 426
WCGPC + + VEL + K D E + + + PT F G
Sbjct: 117 WCGPC----RFISPVIVELSKQYPDVTTYKVDIDEGGISNTISKLNITAVPTLHFFKGGS 172
Query: 427 LLNVVFGADAPRLARTIEQ 483
V GAD +L +EQ
Sbjct: 173 KKGEVVGADVTKLKNLMEQ 191
>At2g34260.2 68415.m04192 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 296
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 140 TVIICGKKAAQVQLQAELNTDDEWNKFINRDGLLVIDVSPNGVDPASGW 286
T+ +C + ++VQ Q+E + D+ + I ++G VI + NG W
Sbjct: 101 TLSVCNLRTSKVQSQSEFSEDELLSVVIMKNGRKVICGTQNGTLLLYSW 149
>At2g34260.1 68415.m04191 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 353
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 140 TVIICGKKAAQVQLQAELNTDDEWNKFINRDGLLVIDVSPNGVDPASGW 286
T+ +C + ++VQ Q+E + D+ + I ++G VI + NG W
Sbjct: 158 TLSVCNLRTSKVQSQSEFSEDELLSVVIMKNGRKVICGTQNGTLLLYSW 206
>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein
helicase, putative similar to SP|O75643 U5 small nuclear
ribonucleoprotein 200 kDa helicase {Homo sapiens};
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2171
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +1
Query: 460 RLARTIEQELQNEELAKKEKENDLKEPLMNLRLLSRK 570
R+A+ QEL+++ K+KE D+ + ++N+R R+
Sbjct: 58 RVAKGRPQELEDKLKKSKKKERDVVDDMVNIRQSKRR 94
>At1g03090.2 68414.m00284 methylcrotonyl-CoA carboxylase alpha
chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase
1 (MCCA) nearly identical to SP|Q42523
Methylcrotonyl-CoA carboxylase alpha chain,
mitochondrial precursor (EC 6.4.1.4)
(3-Methylcrotonyl-CoA carboxylase 1) (MCCase alpha
subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase
alpha subunit) {Arabidopsis thaliana}
Length = 734
Score = 27.9 bits (59), Expect = 6.1
Identities = 24/102 (23%), Positives = 36/102 (35%)
Frame = +1
Query: 145 HNLWQEGGPGSTPGRTQHRR*VE*VHQ*RRTFSDRRVTEWCGPCIGMVGNLKKIKVELGG 324
H+ W E G P H+ ++T EW C G NL + V
Sbjct: 519 HSTWNESNHGKVPSIWYSNPPFRVHHEAKQTIE----LEWNNECEGTGSNLISLGVRYQP 574
Query: 325 DNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAGQLLNVVFGA 450
D +L +D+ R + + + AAG +NV A
Sbjct: 575 DGSYLIEEGNDSPSLELRVTRAGKCDFRVEAAGLSMNVSLAA 616
>At1g03090.1 68414.m00283 methylcrotonyl-CoA carboxylase alpha
chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase
1 (MCCA) nearly identical to SP|Q42523
Methylcrotonyl-CoA carboxylase alpha chain,
mitochondrial precursor (EC 6.4.1.4)
(3-Methylcrotonyl-CoA carboxylase 1) (MCCase alpha
subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase
alpha subunit) {Arabidopsis thaliana}
Length = 714
Score = 27.9 bits (59), Expect = 6.1
Identities = 24/102 (23%), Positives = 36/102 (35%)
Frame = +1
Query: 145 HNLWQEGGPGSTPGRTQHRR*VE*VHQ*RRTFSDRRVTEWCGPCIGMVGNLKKIKVELGG 324
H+ W E G P H+ ++T EW C G NL + V
Sbjct: 499 HSTWNESNHGKVPSIWYSNPPFRVHHEAKQTIE----LEWNNECEGTGSNLISLGVRYQP 554
Query: 325 DNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAGQLLNVVFGA 450
D +L +D+ R + + + AAG +NV A
Sbjct: 555 DGSYLIEEGNDSPSLELRVTRAGKCDFRVEAAGLSMNVSLAA 596
>At3g02860.2 68416.m00279 expressed protein
Length = 313
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 466 ARTIEQELQNEELAKKEKENDLKEPLMNLR 555
A TIE+E Q E+ + KEK LK M L+
Sbjct: 240 AETIEEEEQREQRSYKEKVEILKRKKMELK 269
>At3g02860.1 68416.m00278 expressed protein
Length = 312
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 466 ARTIEQELQNEELAKKEKENDLKEPLMNLR 555
A TIE+E Q E+ + KEK LK M L+
Sbjct: 239 AETIEEEEQREQRSYKEKVEILKRKKMELK 268
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,804,253
Number of Sequences: 28952
Number of extensions: 294650
Number of successful extensions: 879
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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