Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060262.seq
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305...    29   1.7  
04_03_1027 - 21820843-21820878,21820974-21821117,21821220-218213...    29   3.0  
11_06_0643 - 25773250-25773843                                         28   4.0  
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321...    28   4.0  
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707...    28   4.0  
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468...    27   9.1  
07_01_0717 - 5482084-5482482                                           27   9.1  
01_07_0231 + 42176598-42178117,42178232-42179753                       27   9.1  
01_06_0332 + 28522797-28523536,28525035-28525067,28525956-285269...    27   9.1  

>08_02_1291 +
           25930056-25930067,25930289-25930334,25930434-25930546,
           25930645-25930930,25931357-25931421,25931642-25931693,
           25931774-25931883,25932611-25932641,25932853-25933004,
           25934622-25934840
          Length = 361

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 190 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 101
           +GG  L    ++Q  G   Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129


>04_03_1027 -
           21820843-21820878,21820974-21821117,21821220-21821358,
           21821522-21821652,21823615-21823670,21823964-21824258
          Length = 266

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -2

Query: 349 ERXPRRWLQPRLAVPXQASXSVPRTPAKCCSPFPCVPTQSFVDPIHL 209
           E   R W + RLA+   ++  V R   K   P P  PT +F+   HL
Sbjct: 47  EAAKRGWSEIRLAIEELSAVDVERRGGKPPPPLPPPPTLTFLALSHL 93


>11_06_0643 - 25773250-25773843
          Length = 197

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = -2

Query: 319 RLAVPXQASXSVPRTPAKCCSPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQ 140
           RL+ P  +S + P +P+   S  PC+PT   +      +          T+V ++ +  +
Sbjct: 103 RLSSPPTSSSAPPSSPSPGASSPPCLPTSPAIPSPRASV----WWSSSSTDVFLNSVSAR 158

Query: 139 VDYDFGVGGRLPIVRCEERV-DHEGQ 65
               +  GGRLP +R    + DH G+
Sbjct: 159 CCRRY--GGRLPRLRLRALLPDHHGR 182


>11_06_0411 -
           23230580-23230795,23231407-23231862,23232142-23232195,
           23232251-23232367
          Length = 280

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 175 VRVHRADTGRSSNELDRQTTELERRG 252
           V+ H  +  R S EL+RQ  ELER+G
Sbjct: 89  VQRHGEELERQSRELERQREELERQG 114


>07_03_0809 -
           21669632-21669637,21669871-21670131,21670573-21670752,
           21671458-21672819
          Length = 602

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 62  SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 217
           +L   +D L+  YD+  PPDS+ V        HA      + +R+L  + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209


>09_04_0190 -
           15443764-15443838,15445360-15445458,15446396-15446891,
           15449436-15449479,15449999-15450104,15450243-15450314,
           15450474-15450588,15451182-15451407
          Length = 410

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +1

Query: 181 VHRADTGRSSNELDRQTTELERRGMG 258
           V+ A   +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396


>07_01_0717 - 5482084-5482482
          Length = 132

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -1

Query: 290 KRSEDTSQVLQPIPLRSNSVVCRSNSFEDLPVSARWTRTHEC*HVSNAGSG*LRFWS 120
           +RS+ TS     +   S++   R +  +D PVS R   TH    +S++ S     WS
Sbjct: 53  RRSDRTSSATSSLNAASDNSADRVHRAQDTPVSHRSAGTHAVGELSSSNSS--SMWS 107


>01_07_0231 + 42176598-42178117,42178232-42179753
          Length = 1013

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 262 CSPFPCVPTQSFV-DPIHLKICQYPHGGLGLTNVSMS 155
           CSP    P +  V  P+ L   +YPHGG G  N+  S
Sbjct: 587 CSPLVTQPCRMNVAKPLVLDPNEYPHGGDGDNNLETS 623


>01_06_0332 +
           28522797-28523536,28525035-28525067,28525956-28526942,
           28527153-28527282
          Length = 629

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 205 SSNELDRQTTELERRGMGCSTWLVSSERLXRP 300
           SS+E+D +TTEL R+ +  + W +      RP
Sbjct: 530 SSSEIDGETTELVRKMVVVALWCIQVVPTNRP 561


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,525,052
Number of Sequences: 37544
Number of extensions: 307717
Number of successful extensions: 776
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)