Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060262.seq
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 35 0.035
SB_27375| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.3e-07) 32 0.25
SB_30974| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.9e-07) 31 0.76
SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 31 0.76
SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24) 31 0.76
SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 29 1.8
SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 29 1.8
SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41) 29 2.3
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_17868| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.7e-36) 29 3.1
SB_51192| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.2) 28 4.1
SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 28 4.1
SB_42075| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_41503| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_7186| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_46603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_42547| Best HMM Match : AMP-binding (HMM E-Value=1.1e-05) 28 5.4
SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 27 7.1
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_35938| Best HMM Match : BTB (HMM E-Value=8.5e-24) 27 7.1
SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24) 27 9.4
>SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 422
Score = 35.1 bits (77), Expect = 0.035
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +1
Query: 364 SNNGSVSWIKRLDIXTPISMQLDNXPNDMXTCTFKFGSRMHNSDEMDLLIDK 519
S++GS +W+ I T + + P D+ C KFGS H+ ++D+ + K
Sbjct: 86 SSDGSAAWLSPAIIKTECKVDVRLFPFDVQYCDLKFGSWTHDGLKIDIQLRK 137
>SB_27375| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.3e-07)
Length = 240
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +1
Query: 367 NNGSVSWIKRLDIXTPISMQLDNXPNDMXTCTFKFGSRMHNSDEM 501
N G W + SM L P D TC KFGS + S+ M
Sbjct: 183 NTGKCVWSGPVTFTFTCSMALSRWPFDQQTCAMKFGSLSYGSNLM 227
>SB_30974| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.9e-07)
Length = 134
Score = 30.7 bits (66), Expect = 0.76
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 364 SNNGSVSWIKRLDIXTPISMQLDNXPNDMXTCTFKFGSRMHNSDEMDL 507
S+ G W+ + T + + P D +CT KFGS +++ +D+
Sbjct: 20 SHTGLNMWLAPTILTTSCKINVKYFPFDQQSCTLKFGSWTYDAGSVDI 67
>SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 716
Score = 30.7 bits (66), Expect = 0.76
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 364 SNNGSVSWIKRLDIXTPISMQLDNXPNDMXTCTFKFGSRMHNSDEMDL 507
S+ G W+ + T + + P D +CT KFGS +++ +D+
Sbjct: 173 SHTGLNMWLAPTILTTSCKINVKYFPFDQQSCTLKFGSWTYDAGSVDI 220
>SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24)
Length = 445
Score = 30.7 bits (66), Expect = 0.76
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 367 NNGSVSWIKRLDIXTPISMQLDNXPNDMXTCTFKFGSRMHNSDEMDLLID 516
+NG SW+ + + P D CT +FGS ++ ++DL ID
Sbjct: 88 SNGYNSWLSPAMFKSTCDVNTRYFPFDDQHCTLEFGSWAFDASQLDLQID 137
>SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 367 NNGSVSWIKRLDIXTPISMQLDNXPNDMXTCTFKFGSRMHNSDE 498
++G+V W+ + + + + + N P D C +FGS ++ E
Sbjct: 274 SDGTVQWLSPIQVKSECKIDITNFPLDEQFCKLEFGSWAYDGFE 317
>SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 961
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/75 (26%), Positives = 30/75 (40%)
Frame = -2
Query: 355 RGERXPRRWLQPRLAVPXQASXSVPRTPAKCCSPFPCVPTQSFVDPIHLKICQYPHGGLG 176
RG R PR ++ R ++ S A FPC Q F P ++C H G
Sbjct: 403 RGMRIPRFRVRLRAGKAIKSYSSREEGGAMRLYVFPCSKIQRFFRPRRSELCVLLHAGYP 462
Query: 175 LTNVSMSQMQGQVDY 131
++ + +VDY
Sbjct: 463 RNSLKVDYYGLKVDY 477
>SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 506
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 364 SNNGSVSWIKRLDIXTPISMQLDNXPNDMXTCTFKFGSRMHNSDEMDL 507
S +GS +W + + + P D TC KFGS + ++D+
Sbjct: 103 SKDGSSAWFSPASFRSTCKIDVTYFPFDEQTCYMKFGSWTYTIADVDI 150
>SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 541
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +1
Query: 364 SNNGSVSWIKRLDIXTPISMQLDNXPNDMXTCTFKFGSRMHNSDEMDL 507
+++GS +W+ I + + + P D+ +C FGS H+ ++D+
Sbjct: 144 NHDGSTTWLAPAIIKSECKIDVRFFPFDVQSCELTFGSWTHDGLKIDI 191
>SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41)
Length = 342
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 373 GSVSWIKRLDIXTPISMQLDNXPNDMXTCTFKFGSRMHNSDEMDL 507
G V W+ L + T M + + P D C +FGS + MD+
Sbjct: 102 GEVLWMNPLILHTSCGMDIAHFPFDNQACELRFGSWSTSLRYMDV 146
>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1516
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -2
Query: 175 LTNVSMSQMQGQVDYDFGVGGRLPIVRCEERVDHE 71
L+++S +G VD FGV + +R +++D+E
Sbjct: 594 LSHISGGDKEGDVDLHFGVNSQTGAIRLNKKLDYE 628
>SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +1
Query: 370 NGSVSWIKRLDIXTPISMQLDNXPNDMXTCTFKFGSRMHNSDEMDLLID 516
+G V WI + + ++++ P D CT F S + E+ L +D
Sbjct: 461 SGKVDWIAQASFTSTCNLRVRFWPMDDQFCTLTFSSWTYTESEIALKMD 509
>SB_17868| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.7e-36)
Length = 592
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1
Query: 367 NNGSVSWIKRLDIXTPISMQLDNXPNDMXTCTFKFGSRMHNSDEMDL 507
+NG+ W + + +++ P D TC KFGS H+ +D+
Sbjct: 207 SNGTNKWRSPALLKSICKIKVKFFPFDSQTCKLKFGSFSHDITTLDM 253
>SB_51192| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.2)
Length = 75
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = +1
Query: 367 NNGSVSWIKRLDIXTPISMQLDNXPNDMXTCTFKFGSRMHNSDEMDL 507
+ G + W + T + + P D TC FGS +N ++D+
Sbjct: 21 STGDIEWYSPNILKTHCKIDIQYFPFDTQTCKLTFGSWTYNGLKIDV 67
>SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 434
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = +1
Query: 367 NNGSVSWIKRLDIXTPISMQLDNXPNDMXTCTFKFGSRMHNSDEMDL 507
+ G + W + T + + P D TC FGS +N ++D+
Sbjct: 146 STGDIEWYSPNILKTHCKIDIQYFPFDTQTCKLTFGSWTYNGLKIDV 192
>SB_42075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 370 NGSVSWIKRLDIXTPISMQLDNXPNDMXTCTFKFGSRMHNSDEMDL 507
+GS+ + + I M L + P D TC FGS + +++ L
Sbjct: 48 DGSIFYSRSAHIVASCEMDLRDFPMDTQTCNLVFGSYGYTDNDIKL 93
>SB_41503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +1
Query: 370 NGSVSWIKRLDIXTPISMQLDNXPNDMXTCTFKFGSRMHNSDEMDLL 510
NG W+ + + + + + P D C+ KFGS ++ + +DL+
Sbjct: 22 NGINIWLAPVLLTSSCKIDVTYFPFDEQHCSLKFGSWTYDGERLDLV 68
>SB_7186| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 372 RLRLLDKALGHXHSNFYAVRQXAQR 446
R RL +++ G +S FYAVR A R
Sbjct: 49 RFRLKERSFGRQYSQFYAVRLMAMR 73
>SB_46603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 370 NGSVSWIKRLDIXTPISMQLDNXPNDMXTCTFKFGSRMHNSDEMDL 507
+GS+ + + I M L + P D TC FGS + +++ L
Sbjct: 175 DGSIFYSRSAHIVASCEMDLRDFPMDTQTCNLVFGSYGYTDNDIKL 220
>SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 367 NNGSVSWIKRLDIXTPISMQLDNXPNDMXTCTFKFGSRMHNSDEMDL 507
+NG W +I + ++ + P D C KFGS ++ +++L
Sbjct: 123 HNGYTEWFAPTEIHSICAIDITYFPFDEQFCKMKFGSWSYSGRQLNL 169
>SB_42547| Best HMM Match : AMP-binding (HMM E-Value=1.1e-05)
Length = 529
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 265 CCSPFPCVPTQSFVDP 218
C PFPC+PT + DP
Sbjct: 388 CTKPFPCMPTHFWNDP 403
>SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 275
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = +1
Query: 370 NGSVSWIKRLDIXTPISMQLDNXPNDMXTCTFKFGSRMHNSDEMDL 507
+G+ +W+ T + + P D C KFGS ++++ +D+
Sbjct: 104 SGTNTWLAPKIFTTSCKINVKYFPFDQQECRLKFGSWTYDANSVDI 149
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = -3
Query: 153 KCRVRLTTILES---GGDSRSYVARSESIMRDSDVAFSHSAALAIAQVRRNLV 4
KC + L LE G Y+ ++ +D D A AA +A +RRN+V
Sbjct: 186 KCLLHLLDRLEECLKQGHLPQYMMPESNLFKDEDPARLAEAASVVADLRRNIV 238
>SB_35938| Best HMM Match : BTB (HMM E-Value=8.5e-24)
Length = 467
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -2
Query: 226 VDPIHLKICQYPHGGLGLTNVSMSQMQGQVDYDFGVGGRLPIV 98
+D I LK+ + GL+ + +QG V YDFG+ LP+V
Sbjct: 368 LDEIALKLPEPVRVTPGLSYCVKAHIQGPVKYDFGITA-LPVV 409
>SB_18870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1352
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 272 SQVLQPIPLRSNSVVCRSNSFEDL 201
S+ L+ +P+R VCR N F DL
Sbjct: 1223 SECLEELPIREAVKVCRHNCFNDL 1246
>SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24)
Length = 373
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +2
Query: 86 LLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAG 250
L TY+++ P D + V L L L ++ + T+ ++ ++ W D RL WN
Sbjct: 20 LFRTYNKDVLPKETLDKGVPVRLDLALNQIIDVNKRAQTMTVVIWVRQYWRDPRLRWNVS 79
Query: 251 EW 256
+
Sbjct: 80 AY 81
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,876,607
Number of Sequences: 59808
Number of extensions: 310891
Number of successful extensions: 740
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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