Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060262.seq
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01260.2 68418.m00035 glycoside hydrolase starch-binding doma...    28   3.3  
At5g01260.1 68418.m00034 glycoside hydrolase starch-binding doma...    28   3.3  
At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zi...    28   4.4  
At3g63220.2 68416.m07103 kelch repeat-containing F-box family pr...    27   5.8  
At3g63220.1 68416.m07102 kelch repeat-containing F-box family pr...    27   5.8  

>At5g01260.2 68418.m00035 glycoside hydrolase starch-binding
           domain-containing protein low similarity to SP|P31797
           Cyclomaltodextrin glucanotransferase precursor (EC
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
           {Bacillus stearothermophilus}; contains Pfam profile
           PF00686: Starch binding domain
          Length = 385

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 284 SEDTSQVLQPIPLRSNSVVCRSNSFEDLPVSA 189
           S  +S++L+P+PLRS+S+     + ED  + A
Sbjct: 51  SAQSSRILKPVPLRSSSIKDSQVNVEDEEIEA 82


>At5g01260.1 68418.m00034 glycoside hydrolase starch-binding
           domain-containing protein low similarity to SP|P31797
           Cyclomaltodextrin glucanotransferase precursor (EC
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
           {Bacillus stearothermophilus}; contains Pfam profile
           PF00686: Starch binding domain
          Length = 306

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 284 SEDTSQVLQPIPLRSNSVVCRSNSFEDLPVSA 189
           S  +S++L+P+PLRS+S+     + ED  + A
Sbjct: 51  SAQSSRILKPVPLRSSSIKDSQVNVEDEEIEA 82


>At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zinc
           finger domain-containing protein contains Pfam domains
           PF03469: XH domain, PF03468: XS domain and PF03470: XS
           zinc finger domain
          Length = 634

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 164 NIRESESTVRILADLQMNWIDKRLSWNAGEWAAALGWCPR 283
           ++ E E    I    + +WIDKR  W     + A GWC R
Sbjct: 183 SVTELEKEYEIRGCGRKDWIDKRGDWR----SKAYGWCAR 218


>At3g63220.2 68416.m07103 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 352

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 122 SKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAG 250
           S +VVN  +H+ H  +    STV++L  +++ W  K   W  G
Sbjct: 210 SGLVVNGKVHVLHKGL----STVQVLESVKLGWDVKDYGWPQG 248


>At3g63220.1 68416.m07102 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 345

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 122 SKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAG 250
           S +VVN  +H+ H  +    STV++L  +++ W  K   W  G
Sbjct: 203 SGLVVNGKVHVLHKGL----STVQVLESVKLGWDVKDYGWPQG 241


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,951,757
Number of Sequences: 28952
Number of extensions: 212289
Number of successful extensions: 492
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)