Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060261.seq
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   4.1  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   5.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   9.4  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 451 IKISSDRYRRLPXRIGHRMTALSVFATSSATLECLRSVRY 570
           +  S +R+R L  R GHR T  S+ ATS    +  + V Y
Sbjct: 54  VSSSVNRFR-LRSRPGHRKTDNSLSATSKKDKDGYKVVCY 92


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 575 PGPYXNRTALVSVY 616
           PGPY N T  ++ Y
Sbjct: 297 PGPYTNATGFLAYY 310


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 509 LPSPYLPHHPQPWN 550
           LP P  PHH  P N
Sbjct: 735 LPPPPHPHHQPPRN 748


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 509 LPSPYLPHHPQPWN 550
           LP P  PHH  P N
Sbjct: 627 LPPPPHPHHQPPRN 640


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,504
Number of Sequences: 336
Number of extensions: 1897
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)