Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060261.seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    29   0.83 
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.5  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   5.8  

>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 592 VGIWPRNRNGLNGDIPRLRMMWQIRRGQSY 503
           V + P +R GL+G   R    W ++ GQSY
Sbjct: 544 VAVSPDSRWGLSGSKDRSMQFWDLQTGQSY 573


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +2

Query: 479 ASRXVSVTV*LPSPYLPHHPQPWNVSVQSVTVPGPYXNRTALVSVYLAYGPKSWHWSSS 655
           ++R  S+TV  P    PHHP+    S+++  +   Y     L S  L+      H+S+S
Sbjct: 139 STRKRSLTVPTPRTSFPHHPRSRRFSLKNAAIATSYHKFKPLSSNSLS--SSGMHFSAS 195


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 594 GRHWFRSIWPMGRRAGTGRH 653
           G HW+  I P+ R  G G H
Sbjct: 273 GDHWYNWILPLRRSPGDGEH 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,986,815
Number of Sequences: 5004
Number of extensions: 30200
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)