Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060261.seq
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1089 - 30758700-30758857,30760016-30760115,30760364-30760918     28   7.9  
02_05_1247 + 35233756-35233785,35234902-35236107                       28   7.9  
02_04_0067 - 19425019-19425288,19425393-19425647,19425766-194259...    28   7.9  

>04_04_1089 - 30758700-30758857,30760016-30760115,30760364-30760918
          Length = 270

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +1

Query: 559 SVRYGSGAIXQPDGT----GFGLSGLWAEELALVVILXM 663
           S+ Y    + +PD T     +G  G W EE  L+VIL M
Sbjct: 221 SLGYSCQKLLKPDATCKDASYGFVGRWTEEGKLIVILVM 259


>02_05_1247 + 35233756-35233785,35234902-35236107
          Length = 411

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 515 SPYLPHHPQPWNVSVQSVTVPGPYXNRTALVSVYLAYGPKSWHWSSSFXWRTITA 679
           S ++PHHP   +  +  +TV G       L++ Y+       +W+SS    T TA
Sbjct: 128 SSFVPHHPSITSFPILVLTVLGILTTSVLLLTYYIFVIRCCLNWNSSSSSDTRTA 182


>02_04_0067 - 19425019-19425288,19425393-19425647,19425766-19425937,
            19426069-19426302,19426523-19426656,19427663-19427746,
            19428355-19428645,19428788-19429120,19429317-19429390,
            19429464-19429644,19429993-19430096,19430232-19430392,
            19430727-19431040,19431583-19431864,19432431-19432732,
            19433176-19433266,19433368-19433421,19438917-19438993,
            19439081-19439240,19439410-19439494,19439574-19440130
          Length = 1404

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 542  PWNVSVQSVTVPGPYXNRTALVSVYLAYGPKSWHWSSS-FXWRTITAA 682
            PW  S+  V +  PY     L+ +++AY    + W+++ F W   T A
Sbjct: 1223 PWAYSLAQVAMEIPYVLVQILLIMFIAYPMIGYAWTAAKFFWFMYTIA 1270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,842,282
Number of Sequences: 37544
Number of extensions: 273597
Number of successful extensions: 696
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)