Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060261.seq
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z67756-3|CAA91764.3|  377|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/41 (48%), Positives = 21/41 (51%)
 Frame = +3

Query: 561 SPLRFRGHXPTGRHWFRSIWPMGRRAGTGRHPXHGVQSRRP 683
           SP   RGH   GRH  RS  P GR  G G H  HG +S  P
Sbjct: 231 SPGGRRGHG--GRHGSRSGSPGGRH-GHGGHGGHGSRSGSP 268


>Z67756-3|CAA91764.3|  377|Caenorhabditis elegans Hypothetical
           protein R07A4.4 protein.
          Length = 377

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 466 DRYRRLPXRI--GHRMTALSVFATSSATLECLRS 561
           D +RR+P  I  GH    +SV + +   LEC+++
Sbjct: 135 DVFRRIPQHILLGHASEVISVASENECVLECIKA 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,434,009
Number of Sequences: 27780
Number of extensions: 186630
Number of successful extensions: 364
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)