Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060261.seq
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   8.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.3  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +2

Query: 530 HHPQPWNVSVQSVTVPGP 583
           HHP P  V +   T P P
Sbjct: 283 HHPDPGEVDLPPETQPTP 300


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 519 RICHIIRNLGMSPFSPLRFRGHXPTG 596
           R+  ++  +G+   SPL+  G  PTG
Sbjct: 377 RLPAVLSRIGIILASPLKREGGPPTG 402


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 610 RNQCRPVGIWPRNRNGLNGDIPRLRMM 530
           R   +P  IW R      GD+P LR +
Sbjct: 28  RGNPQPDIIWVRADGSAVGDVPGLRQV 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,558
Number of Sequences: 438
Number of extensions: 2475
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)