Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060260.seq
         (654 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6EEG3 Cluster: Putative outer membrane protein; n=1; P...    34   2.6  
UniRef50_Q4QF59 Cluster: Nucleoside transporter 1, putative; n=8...    34   3.4  
UniRef50_Q7P365 Cluster: FUSOBACTERIUM OUTER MEMBRANE PROTEIN FA...    33   6.0  
UniRef50_Q0FHX0 Cluster: Putative uncharacterized protein; n=1; ...    33   7.9  
UniRef50_A3SI48 Cluster: Type I secretion target repeat protein;...    33   7.9  
UniRef50_Q9UKN8 Cluster: General transcription factor 3C polypep...    33   7.9  

>UniRef50_A6EEG3 Cluster: Putative outer membrane protein; n=1;
           Pedobacter sp. BAL39|Rep: Putative outer membrane
           protein - Pedobacter sp. BAL39
          Length = 1105

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +1

Query: 61  RNSRRTRDINGGSQRDTFFGEPGVDR-EYNTGGN--EE*IRLHQTL*YGKEEKTF 216
           RN+     ++GGS R TF   PG ++ EYN  GN  ++   LH  L Y   +  F
Sbjct: 425 RNTDAHVSLSGGSDRITFLISPGYNKSEYNFNGNFYDQRFTLHSNLNYASPDNRF 479


>UniRef50_Q4QF59 Cluster: Nucleoside transporter 1, putative; n=8;
           Trypanosomatidae|Rep: Nucleoside transporter 1, putative
           - Leishmania major
          Length = 656

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 238 YLVHIGCEMSFLLSRTTVFDVSVFILRFLRYYIHDPLLVP 119
           Y+V   C +S ++S   VF    +I+ + RY + DP  VP
Sbjct: 195 YVVAFMCGVSMMMSVNAVFSAPAYIMTYYRYAMQDPEAVP 234


>UniRef50_Q7P365 Cluster: FUSOBACTERIUM OUTER MEMBRANE PROTEIN
           FAMILY; n=1; Fusobacterium nucleatum subsp. vincentii
           ATCC 49256|Rep: FUSOBACTERIUM OUTER MEMBRANE PROTEIN
           FAMILY - Fusobacterium nucleatum subsp. vincentii ATCC
           49256
          Length = 650

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 643 SSDPXKITQKNPQGPPI*KTIDYV-PKSKPRTFYFFSGTLNA 521
           SS+P  +T  NP+ P   KT+  V P + P T +FF    NA
Sbjct: 202 SSEPLSVTPPNPKAPE--KTVSIVQPNASPFTGFFFDSNYNA 241


>UniRef50_Q0FHX0 Cluster: Putative uncharacterized protein; n=1;
           Roseovarius sp. HTCC2601|Rep: Putative uncharacterized
           protein - Roseovarius sp. HTCC2601
          Length = 652

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 85  INGGSQRDTFFGEPGVDREYNTGGNEE 165
           INGG+  DT  GE G D  Y  GG+++
Sbjct: 255 INGGADNDTLIGEAGRDVLYGAGGDDD 281


>UniRef50_A3SI48 Cluster: Type I secretion target repeat protein;
           n=1; Roseovarius nubinhibens ISM|Rep: Type I secretion
           target repeat protein - Roseovarius nubinhibens ISM
          Length = 404

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 85  INGGSQRDTFFGEPGVDREYNTGGNE 162
           I+GG+  DT  GE G DR Y   GN+
Sbjct: 201 ISGGTSNDTIRGETGADRLYGNSGND 226


>UniRef50_Q9UKN8 Cluster: General transcription factor 3C
           polypeptide 4; n=24; Tetrapoda|Rep: General
           transcription factor 3C polypeptide 4 - Homo sapiens
           (Human)
          Length = 822

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 289 TDRRLAVCSNSQVAL*CYLVHIGCEMSFLLSRTTVFD 179
           TDR+ AVCSN  + L C+L +  C+ S +  R  + D
Sbjct: 757 TDRKQAVCSNGHIWLRCFLTYQSCQ-SLIYRRCLLHD 792


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 588,368,191
Number of Sequences: 1657284
Number of extensions: 11079714
Number of successful extensions: 28095
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28066
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)