Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060260.seq
         (654 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.54 
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   5.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   6.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   6.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   6.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   6.7  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 213 CLFFFPVLQCLM*AYLFFVSSGIIFTIHSWF 121
           CL +F +    +    +F S+ IIFTIH  F
Sbjct: 198 CLDYFTLHLLFLPCIYYFYSAFIIFTIHLLF 228



 Score = 24.6 bits (51), Expect = 0.72
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 213 CLFFFPVLQCLM*AYLFFVSSGIIFTIHSWF 121
           C+++F V    +    +F  + IIFT+H  F
Sbjct: 132 CIYYFVVPLFFLLCIYYFYCAFIIFTVHLLF 162



 Score = 24.2 bits (50), Expect = 0.95
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -1

Query: 270 YVVILKSPCNVISFT-SAVKCLFFFPVLQCLM*AYLFFVSSGIIFTIHSWF 121
           + V L   C  I FT   + C ++F     ++    +F  + IIFT+H  F
Sbjct: 79  FTVHLLFYCPFIIFTVHFLLCTYYFYYAFIILLCVYYFYYAFIIFTVHLLF 129


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 517 KQHSGCRRKNKKS*ASILVRNRW 585
           K H+  R+KN+K   ++L    W
Sbjct: 383 KHHANLRQKNQKGEVTVLEIEDW 405


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 262 YYILPDVDPSVGVEIT 309
           +YILPD+D   G  +T
Sbjct: 186 FYILPDLDVVKGAMLT 201


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 262 YYILPDVDPSVGVEIT 309
           +YILPD+D   G  +T
Sbjct: 186 FYILPDLDVVKGAMLT 201


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 262 YYILPDVDPSVGVEIT 309
           +YILPD+D   G  +T
Sbjct: 186 FYILPDLDVVKGAMLT 201


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 262 YYILPDVDPSVGVEIT 309
           +YILPD+D   G  +T
Sbjct: 186 FYILPDLDVVKGAMLT 201


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,723
Number of Sequences: 336
Number of extensions: 2874
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)