Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060260.seq
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    27   1.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.2  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   9.5  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    25   9.5  

>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 463 DWVIENAIXYDND 501
           DW++ENAI YD D
Sbjct: 245 DWIVENAIYYDAD 257


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 343  PRLCSSPARSS-WLSRRRQTDRRLAVCSNSQVAL*C 239
            P +  +P  +  W S    T+RRL  CS  +V L C
Sbjct: 2075 PSIAGNPIFNDIWTSIASWTERRLQSCSQIEVTLPC 2110


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 567 NRSLGLFIFSPAP*MLLSCHKLIVVI 490
           NR L + IF PA  +L+  HK ++++
Sbjct: 141 NRLLDMEIFEPAISLLMKTHKNLIIL 166


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 252 SPCNVISFTSAVKCLFFFPVLQ 187
           S C+ ++  +A KC F FP +Q
Sbjct: 159 SNCSSVNLHNATKCNFTFPTIQ 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,419,815
Number of Sequences: 5004
Number of extensions: 45141
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)