BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV060260.seq (654 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|... 27 1.8 SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 7.2 SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 9.5 SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 25 9.5 >SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|||Manual Length = 376 Score = 27.5 bits (58), Expect = 1.8 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = +1 Query: 463 DWVIENAIXYDND 501 DW++ENAI YD D Sbjct: 245 DWIVENAIYYDAD 257 >SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 3655 Score = 25.4 bits (53), Expect = 7.2 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Frame = -3 Query: 343 PRLCSSPARSS-WLSRRRQTDRRLAVCSNSQVAL*C 239 P + +P + W S T+RRL CS +V L C Sbjct: 2075 PSIAGNPIFNDIWTSIASWTERRLQSCSQIEVTLPC 2110 >SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual Length = 1828 Score = 25.0 bits (52), Expect = 9.5 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = -1 Query: 567 NRSLGLFIFSPAP*MLLSCHKLIVVI 490 NR L + IF PA +L+ HK ++++ Sbjct: 141 NRLLDMEIFEPAISLLMKTHKNLIIL 166 >SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosaccharomyces pombe|chr 1|||Manual Length = 259 Score = 25.0 bits (52), Expect = 9.5 Identities = 9/22 (40%), Positives = 14/22 (63%) Frame = -1 Query: 252 SPCNVISFTSAVKCLFFFPVLQ 187 S C+ ++ +A KC F FP +Q Sbjct: 159 SNCSSVNLHNATKCNFTFPTIQ 180 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,419,815 Number of Sequences: 5004 Number of extensions: 45141 Number of successful extensions: 115 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 115 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 115 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 295793106 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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