Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060260.seq
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0435 - 14000891-14001379,14001429-14001563                       35   0.065
06_03_1097 - 27570037-27570262,27570575-27570730,27570763-275708...    29   3.2  
01_06_1156 + 34974727-34974833,34975110-34975217,34978124-34978706     28   7.5  
03_05_0712 - 27057858-27057941,27058093-27058182,27058268-270583...    27   9.9  

>05_03_0435 - 14000891-14001379,14001429-14001563
          Length = 207

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +1

Query: 1   GTRRSATDNGRKRHTGELYIRNSRRTRDINGGSQRDTFFGEPGVDREYNTGG 156
           G +  A   GR+R +G    R+  R R+++GGS+R     + G  R +N GG
Sbjct: 130 GGQLEAARGGRRRSSGLRRRRDGWRWREVDGGSRRAVAEADGGARRGHNGGG 181


>06_03_1097 -
           27570037-27570262,27570575-27570730,27570763-27570881,
           27572154-27572236,27574991-27575041,27575218-27575674,
           27576139-27576228,27576672-27576701
          Length = 403

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 246 KAT*ELLHTARRRSVCRRRDNHELRAGELHSRGVPASGA 362
           +AT  L+H        +  D + + AG  H+RGVPA+GA
Sbjct: 234 RATVMLMHNVHHLRGGQLVDLNRVNAGPDHNRGVPANGA 272


>01_06_1156 + 34974727-34974833,34975110-34975217,34978124-34978706
          Length = 265

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 48  RTLYTK*PKNKRYQWRKSKRYLLRG 122
           RT YT  P +  YQWRK  + ++RG
Sbjct: 43  RTEYTYAPYHDGYQWRKYGQKMIRG 67


>03_05_0712 -
           27057858-27057941,27058093-27058182,27058268-27058384,
           27059759-27059866,27060314-27060406,27060499-27060669,
           27061505-27061757,27061860-27062138,27062939-27063273,
           27063364-27064332,27064711-27065182,27065243-27065291,
           27066564-27066804,27067606-27067695,27068172-27068294,
           27068365-27068418
          Length = 1175

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/57 (29%), Positives = 33/57 (57%)
 Frame = +3

Query: 177 TSNTVVRERRKDISQPM*TR*HYKAT*ELLHTARRRSVCRRRDNHELRAGELHSRGV 347
           TS++  R    D+ +P+  + H +   +LL  A+  +VC+R++NH+    + HSR +
Sbjct: 443 TSDSCSRTLFMDLLKPIYQQWHLR---KLLVLAKEDAVCKRQNNHDPDT-QTHSRSL 495


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,136,104
Number of Sequences: 37544
Number of extensions: 319539
Number of successful extensions: 700
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)