Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060260.seq
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_2243| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)            28   5.8  
SB_58810| Best HMM Match : DUF1613 (HMM E-Value=1.8)                   28   7.6  
SB_19202| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1498

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = -3

Query: 652 P*TSSDPXKITQKNPQGPPI*KTIDYVPKSKPRTFYFFSGTLNAAFLSQ 506
           P T   P  I +  P  P      +  PKS PR   F SGTL   F S+
Sbjct: 5   PETIPGPEMIPKSTPTDPRTRNDTEESPKSIPRNCGFISGTLGDRFGSR 53


>SB_2243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +1

Query: 1   GTRRSATD-NGRKRHTGELYIRNSRRTRDINGGSQRDTFFGEPGVDREYNTGGNEE*IRL 177
           GTR + T  + R   TG  +   SR  R       +DT  G  G+D ++  G  E+   +
Sbjct: 84  GTRSTVTGVSTRSTVTGYRHAARSRGYRHAARSRGKDTQHGHGGIDTQHGHGETEKGEYI 143

Query: 178 HQTL*YGKEEKTFH 219
            Q   Y  + KT++
Sbjct: 144 LQPSTYSLDRKTWN 157


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -3

Query: 493 HXRLHSR*PSRLVRF*CRPAPKTVSCVSFXRCPPL*RASWXDPQAPDAGTP-RLCSSPAR 317
           + R  SR P R  R    P P+  S     R  P  R S    Q+PD  +P R+ SSPAR
Sbjct: 630 YSRSRSRSPDRRKRS-YSPPPRRRSPFRERRRSPPRRTSRWSSQSPDRRSPARIKSSPAR 688

Query: 316 S 314
           S
Sbjct: 689 S 689


>SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)
          Length = 921

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 240 VISFTSAVKCLFFFPVLQCLM*AYLFFVSSGIIFTIH--SWFPEEG 109
           + SFT+A+  L  + VL+ L    L+F +  II++     W P  G
Sbjct: 827 IASFTTAIARLKLYSVLESLQERVLYFDTDSIIYSSKPGDWHPPRG 872


>SB_58810| Best HMM Match : DUF1613 (HMM E-Value=1.8)
          Length = 989

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 385 RASWXDPQAPDAGTPRLCSSPARSSWLSRRRQTDR 281
           +A+W         TPR  S+P+ SS+L  R ++ R
Sbjct: 776 KATWCQANTSVGNTPRRPSAPSSSSFLHERTESPR 810


>SB_19202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 193 YGKEEKTFHSRCERDNITRRLENYYILPDV 282
           YG+  K FH+ CER+N+   L+   +L  V
Sbjct: 9   YGRALKFFHNFCERNNVLYELDAGSVLAAV 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,412,402
Number of Sequences: 59808
Number of extensions: 351751
Number of successful extensions: 853
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)