Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060260.seq
         (654 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal...    24   3.7  
AJ439060-13|CAD27764.1|  319|Anopheles gambiae putative transcri...    23   6.4  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    23   8.4  
AJ821850-1|CAH25390.1|  426|Anopheles gambiae alpha-2,6-sialyltr...    23   8.4  

>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
           growth factor receptorprotein.
          Length = 1433

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 277 LAVCSNSQVAL*CYLVHIGCEMSFL 203
           LAVC  SQ+ L   L+ +GC + ++
Sbjct: 900 LAVCMTSQMMLITQLMPLGCLLDYV 924


>AJ439060-13|CAD27764.1|  319|Anopheles gambiae putative
           transcription factor protein.
          Length = 319

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 72  KNKRYQWRKSKR 107
           KN+R +WRK KR
Sbjct: 236 KNRRAKWRKQKR 247


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 309  GYLDADRRIDVWQYVVILKSPCNVI 235
            GYL     +DV Q VV +K+P NV+
Sbjct: 937  GYLKMQSSVDVIQVVVPVKAP-NVL 960


>AJ821850-1|CAH25390.1|  426|Anopheles gambiae
           alpha-2,6-sialyltransferase protein.
          Length = 426

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 140 NIIPEETKNKYAYIKHCSTGKKKRHFTADVNEITL 244
           N++    +    Y+KH ST K ++  ++   + TL
Sbjct: 45  NVVQARERRSVFYVKHNSTEKSQKSVSSSDEKPTL 79


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 615,150
Number of Sequences: 2352
Number of extensions: 13071
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64814025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)