Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060260.seq
(654 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC112245-1|AAI12246.1| 822|Homo sapiens general transcription f... 33 1.2
BC104755-1|AAI04756.1| 822|Homo sapiens general transcription f... 33 1.2
BC094774-1|AAH94774.1| 822|Homo sapiens general transcription f... 33 1.2
AL160165-4|CAH70534.1| 822|Homo sapiens general transcription f... 33 1.2
AF142328-1|AAF05087.1| 822|Homo sapiens transcription factor II... 33 1.2
BX572623-1|CAM12862.1| 664|Homo sapiens novel protein protein. 30 6.3
BC032427-1|AAH32427.1| 664|Homo sapiens transmembrane protein 5... 30 6.3
AY845035-1|AAX11933.1| 437|Homo sapiens macoilin isoform 1 prot... 30 6.3
AY845015-1|AAX11913.1| 664|Homo sapiens macoilin protein. 30 6.3
AL031284-6|CAM12861.1| 664|Homo sapiens novel protein protein. 30 6.3
AK001609-1|BAA91786.1| 664|Homo sapiens protein ( Homo sapiens ... 30 6.3
>BC112245-1|AAI12246.1| 822|Homo sapiens general transcription
factor IIIC, polypeptide 4, 90kDa protein.
Length = 822
Score = 32.7 bits (71), Expect = 1.2
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 289 TDRRLAVCSNSQVAL*CYLVHIGCEMSFLLSRTTVFD 179
TDR+ AVCSN + L C+L + C+ S + R + D
Sbjct: 757 TDRKQAVCSNGHIWLRCFLTYQSCQ-SLIYRRCLLHD 792
>BC104755-1|AAI04756.1| 822|Homo sapiens general transcription
factor IIIC, polypeptide 4, 90kDa protein.
Length = 822
Score = 32.7 bits (71), Expect = 1.2
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 289 TDRRLAVCSNSQVAL*CYLVHIGCEMSFLLSRTTVFD 179
TDR+ AVCSN + L C+L + C+ S + R + D
Sbjct: 757 TDRKQAVCSNGHIWLRCFLTYQSCQ-SLIYRRCLLHD 792
>BC094774-1|AAH94774.1| 822|Homo sapiens general transcription
factor IIIC, polypeptide 4, 90kDa protein.
Length = 822
Score = 32.7 bits (71), Expect = 1.2
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 289 TDRRLAVCSNSQVAL*CYLVHIGCEMSFLLSRTTVFD 179
TDR+ AVCSN + L C+L + C+ S + R + D
Sbjct: 757 TDRKQAVCSNGHIWLRCFLTYQSCQ-SLIYRRCLLHD 792
>AL160165-4|CAH70534.1| 822|Homo sapiens general transcription
factor IIIC, polypeptide 4,ng protein 3 protein.
Length = 822
Score = 32.7 bits (71), Expect = 1.2
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 289 TDRRLAVCSNSQVAL*CYLVHIGCEMSFLLSRTTVFD 179
TDR+ AVCSN + L C+L + C+ S + R + D
Sbjct: 757 TDRKQAVCSNGHIWLRCFLTYQSCQ-SLIYRRCLLHD 792
>AF142328-1|AAF05087.1| 822|Homo sapiens transcription factor
IIIC90 protein.
Length = 822
Score = 32.7 bits (71), Expect = 1.2
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 289 TDRRLAVCSNSQVAL*CYLVHIGCEMSFLLSRTTVFD 179
TDR+ AVCSN + L C+L + C+ S + R + D
Sbjct: 757 TDRKQAVCSNGHIWLRCFLTYQSCQ-SLIYRRCLLHD 792
>BX572623-1|CAM12862.1| 664|Homo sapiens novel protein protein.
Length = 664
Score = 30.3 bits (65), Expect = 6.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 237 ISFTSAVKCLFFFPVLQCLM*AYLFFVSSGIIFTIHSWFPEEG 109
++FTS + CL F P+ +LFF +S ++ + W E G
Sbjct: 83 VAFTSNIICLLFIPI------QWLFFAASTYVWVQYVWHTERG 119
>BC032427-1|AAH32427.1| 664|Homo sapiens transmembrane protein 57
protein.
Length = 664
Score = 30.3 bits (65), Expect = 6.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 237 ISFTSAVKCLFFFPVLQCLM*AYLFFVSSGIIFTIHSWFPEEG 109
++FTS + CL F P+ +LFF +S ++ + W E G
Sbjct: 83 VAFTSNIICLLFIPI------QWLFFAASTYVWVQYVWHTERG 119
>AY845035-1|AAX11933.1| 437|Homo sapiens macoilin isoform 1
protein.
Length = 437
Score = 30.3 bits (65), Expect = 6.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 237 ISFTSAVKCLFFFPVLQCLM*AYLFFVSSGIIFTIHSWFPEEG 109
++FTS + CL F P+ +LFF +S ++ + W E G
Sbjct: 83 VAFTSNIICLLFIPI------QWLFFAASTYVWVQYVWHTERG 119
>AY845015-1|AAX11913.1| 664|Homo sapiens macoilin protein.
Length = 664
Score = 30.3 bits (65), Expect = 6.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 237 ISFTSAVKCLFFFPVLQCLM*AYLFFVSSGIIFTIHSWFPEEG 109
++FTS + CL F P+ +LFF +S ++ + W E G
Sbjct: 83 VAFTSNIICLLFIPI------QWLFFAASTYVWVQYVWHTERG 119
>AL031284-6|CAM12861.1| 664|Homo sapiens novel protein protein.
Length = 664
Score = 30.3 bits (65), Expect = 6.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 237 ISFTSAVKCLFFFPVLQCLM*AYLFFVSSGIIFTIHSWFPEEG 109
++FTS + CL F P+ +LFF +S ++ + W E G
Sbjct: 83 VAFTSNIICLLFIPI------QWLFFAASTYVWVQYVWHTERG 119
>AK001609-1|BAA91786.1| 664|Homo sapiens protein ( Homo sapiens
cDNA FLJ10747 fis, clone NT2RP3001799. ).
Length = 664
Score = 30.3 bits (65), Expect = 6.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 237 ISFTSAVKCLFFFPVLQCLM*AYLFFVSSGIIFTIHSWFPEEG 109
++FTS + CL F P+ +LFF +S ++ + W E G
Sbjct: 83 VAFTSNIICLLFIPI------QWLFFAASTYVWVQYVWHTERG 119
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,248,347
Number of Sequences: 237096
Number of extensions: 1642587
Number of successful extensions: 2958
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2958
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -