Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060260.seq
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81131-1|CAB03423.4|  464|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z99283-2|CAB16535.1|  274|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z81454-1|CAB03803.1|  320|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z81131-1|CAB03423.4|  464|Caenorhabditis elegans Hypothetical
           protein T24D1.2 protein.
          Length = 464

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
 Frame = +1

Query: 4   TRRSATDNGRKRHTGE-LYIRNSRRTRDINGGSQRDTFFGEPGVDREYNTGGNEE*IRLH 180
           TR++   N + +  G+ + +R     RDI      +T+F +   D +Y    NEE    +
Sbjct: 128 TRQTRNPNPQMQFEGDRVQVRQGDEIRDITA----ETYFPDDDDDSDYTQSDNEEEEERN 183

Query: 181 QTL*YGKEEKTFHSRCERDNITR 249
            T+     E    S  E D+  R
Sbjct: 184 ATITISSSESDADSEAESDHEER 206


>Z99283-2|CAB16535.1|  274|Caenorhabditis elegans Hypothetical
           protein Y70C5C.3 protein.
          Length = 274

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 584 HRLRTKIEA*DFLFFLRHPECCFLVTNSSLS*XIAFSMTQSS 459
           H   T   + +FL  L   EC  L+T++SLS  I F + Q+S
Sbjct: 81  HVYNTTFTSLNFLEGLEEIECELLITHASLSKSIEFGVYQAS 122


>Z81454-1|CAB03803.1|  320|Caenorhabditis elegans Hypothetical
           protein B0391.3 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = -1

Query: 210 LFFFPVLQCLM*AYLFFVSSGIIFTIHSWFP 118
           LF+  ++Q ++ ++L ++ +GI+F+I   FP
Sbjct: 227 LFYSLIIQSVIPSFLMYLPAGIVFSIPILFP 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,579,261
Number of Sequences: 27780
Number of extensions: 266268
Number of successful extensions: 622
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)