Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060260.seq
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   3.4  
X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.       21   7.9  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -2

Query: 53  SSPVWRFRP 27
           S+PVWRF+P
Sbjct: 549 SAPVWRFQP 557


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 217 HSRCERDNITRRLENYYILPDVDPSVGVEITTSYE 321
           H R  RD+++ R+EN   +   + S     +TS E
Sbjct: 727 HFRQHRDSLSPRVENRSAIVHSEASANANSSTSSE 761


>X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.
          Length = 70

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -3

Query: 370 DPQAPDAGTPRLCSS--PARSSWLSRRRQ 290
           DP+A      ++ ++  PA  SW+ R+RQ
Sbjct: 40  DPEAGIGAVLKVLTTGLPALISWIKRKRQ 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,122
Number of Sequences: 438
Number of extensions: 3875
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)