Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060260.seq
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06350.1 68418.m00711 expressed protein                             29   2.7  
At4g04920.1 68417.m00715 expressed protein                             28   6.2  

>At5g06350.1 68418.m00711 expressed protein
          Length = 890

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 134 IVNIIPEETKNKYAYIKHC 190
           IVN IPE+ +N Y YI+ C
Sbjct: 751 IVNCIPEDKENSYLYIQTC 769


>At4g04920.1 68417.m00715 expressed protein 
          Length = 1250

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -3

Query: 358  PDAGTPRLCSSPAR--SSWLSRRRQTDRRLAVCSNSQVAL*CYLVHIG 221
            PD     +C    R  S W  +RR ++R  A  SN+ V L  YL  +G
Sbjct: 1163 PDTNFSGICDGYNRVHSLWPRKRRMSERDAAFGSNTSVGLGAYLGIMG 1210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,811,664
Number of Sequences: 28952
Number of extensions: 247049
Number of successful extensions: 651
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)