Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060259.seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    29   0.83 
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    29   0.83 
SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.9  
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    27   1.9  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.5  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    27   3.3  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    26   4.4  
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom...    26   5.8  

>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = +1

Query: 292  CGNSLGYPLCNCVHPEEDHAVDWSAVCTAFCTDGYTLGGCPAC-ASQRSSPVAIAGRILN 468
            CG+S G  LCN  +   D  +  +      C D     GCP C  S +      +G +L+
Sbjct: 965  CGDSSGAGLCNKAYEHTDELITMAIERIESC-DCKVREGCPGCITSSKFEGGVCSGEVLD 1023


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 337 EEDHAVDWSAVCTAFCTDGYTLGGCPACASQRSSPVA 447
           + D  V W  V    C+  + L  CP C  ++  PVA
Sbjct: 190 DPDSPVKWEDVWQVLCSSDFQLAACPFCLEEK--PVA 224


>SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 325

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 497 LHQACQPSEVLRIRPAMATGLLRWEAQAGQPPSVYPSVQNAVQTALQS 354
           L Q+ QP+++ RIR A+A  L  W     +   +Y S Q  +++   S
Sbjct: 67  LFQSKQPNDLTRIRKAIAEQLQLWCQACQENADLYRSQQRKLKSRWDS 114


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = +1

Query: 352 VDWSAVCTAFCTDGYTLGG 408
           VDWSAVC    TD YTL G
Sbjct: 41  VDWSAVCH---TDAYTLSG 56


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 413 GQPPSVYPSVQNAVQTALQSTAWSSSGCTQLHNG*PKLLPQSAGH 279
           GQP ++YP +  +    + ST ++SS  +  H      LP    H
Sbjct: 256 GQPQALYPFIYQSRNVPMGSTMFASSNQSAAHPDGNNALPMDNTH 300


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +1

Query: 142 VVCTFLWSWRGGLWRD 189
           V C ++W W  G W D
Sbjct: 411 VTCGYMWYWNNGTWDD 426


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 43  NYSNQRDKRFYFYLSFSLYEHKTELF 120
           NY+N  ++  YF  SF +YE    LF
Sbjct: 519 NYANLLEENAYFEDSFKIYERGVALF 544


>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 198 WVQVPPQTAPPRPKK 154
           WVQ+P +T PP+ KK
Sbjct: 137 WVQMPGKTKPPKLKK 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,816,300
Number of Sequences: 5004
Number of extensions: 60759
Number of successful extensions: 188
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)