Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060259.seq
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0155 + 10871512-10871949,10874414-10874695,10874782-108749... 33 0.21
05_01_0580 + 5210002-5210170,5210466-5210524,5210883-5211668,521... 32 0.49
06_01_1070 + 8750260-8750335,8750432-8751311,8753719-8754646 31 1.1
06_03_0375 + 20052687-20053214,20053943-20054110,20054272-200543... 29 2.6
03_05_0731 - 27213777-27215177,27218188-27218405,27218504-27218648 29 2.6
01_06_1703 + 39301075-39301829,39302735-39303560 29 2.6
05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563 29 3.4
05_04_0298 + 19954904-19954985,19955075-19955888,19955962-19956922 29 3.4
06_01_0019 + 208204-208533,208642-208844,208969-209107 29 4.5
05_01_0126 + 858259-858489,858641-859189,859545-860162 29 4.5
12_01_0816 + 7502669-7503145 28 6.0
05_04_0296 - 19943253-19944159,19944239-19945031,19945434-199454... 28 6.0
04_04_0937 - 29515561-29515758,29515914-29516301,29516925-295170... 28 6.0
04_03_1020 - 21761297-21761555,21761630-21761739,21762402-217626... 28 6.0
03_01_0522 - 3919120-3919696,3919835-3919919,3919955-3919985,392... 28 6.0
07_03_0851 + 22012836-22014017,22016668-22016734,22016774-220168... 28 7.9
>11_03_0155 +
10871512-10871949,10874414-10874695,10874782-10874951,
10875068-10875165,10875775-10877135
Length = 782
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/40 (42%), Positives = 18/40 (45%)
Frame = +1
Query: 259 GEPRFSVCPALCGNSLGYPLCNCVHPEEDHAVDWSAVCTA 378
GEP FS A G GY C+ P E A D A TA
Sbjct: 33 GEPPFSCGGAAAGGGQGYAFCDATLPAEQRAADLVARLTA 72
>05_01_0580 +
5210002-5210170,5210466-5210524,5210883-5211668,
5211898-5212737
Length = 617
Score = 31.9 bits (69), Expect = 0.49
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = -1
Query: 334 GARSYIMDNLSCCHRAQDTQRIEALRIRVSAVGFLQGRL*TYG--DHLGASPATNRPAKT 161
G+R + MD+ S H +++ L + V +V F +GR+ +G HLG AT P
Sbjct: 535 GSRWHSMDSQSARHLSKEIADARNLHLGVKSVSFGEGRVSNFGHSSHLGNGEAT-VPEDA 593
Query: 160 KEKYK 146
K+ +K
Sbjct: 594 KKIHK 598
>06_01_1070 + 8750260-8750335,8750432-8751311,8753719-8754646
Length = 627
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 521 PCPWRTGTLHQACQPSEVLRIRPAMATGLL 432
P PWR T+H+ + +LR+ P A G+L
Sbjct: 347 PKPWRLSTVHRVEELKSLLRMGPIWAAGIL 376
>06_03_0375 +
20052687-20053214,20053943-20054110,20054272-20054354,
20054541-20054610,20054973-20055077
Length = 317
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Frame = +2
Query: 314 HYVTACTLRKTTPWTGAPSAPHSVLMDIRWEVAQPVP--PNGAALWPSPVGSSTLLRVGR 487
HY C L P PS P L + P P P AA P+ ++ LRVG
Sbjct: 19 HYPNFCALAPLRPTRQLPSLPQQQLQQKQHVGHDPSPSEPTTAAASPATAAAAGALRVGI 78
Query: 488 PG 493
G
Sbjct: 79 VG 80
>03_05_0731 - 27213777-27215177,27218188-27218405,27218504-27218648
Length = 587
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -3
Query: 530 AAPPCPWRTGTLHQACQPSEVLRIRPAMATGLLRWEAQAGQ 408
AAP PWR ++ Q + ++RI P +TG++ + A Q
Sbjct: 325 AAPSNPWRLCSVQQVEEVKCLIRIVPVWSTGIIYYVAVVQQ 365
>01_06_1703 + 39301075-39301829,39302735-39303560
Length = 526
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 566 YLLEMVFESQLHAAPPCPWRTGTLHQACQPSEVLRIRPAMATGLL 432
+L + E+ A P PWR T+ Q + VLR+ P A+G++
Sbjct: 253 FLDKAAVETAGDKAEPSPWRLCTVTQVEELKCVLRLLPVWASGII 297
>05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563
Length = 571
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +2
Query: 455 VGSSTLLRVGRPGATFQCARGMAGPRATAI 544
VGSST+ R P AR AGPR T I
Sbjct: 249 VGSSTVFRFCHPAPPPPAARAAAGPRQTQI 278
>05_04_0298 + 19954904-19954985,19955075-19955888,19955962-19956922
Length = 618
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 515 PWRTGTLHQACQPSEVLRIRPAMATGLL 432
PWR T+H+ + ++R+ P A G+L
Sbjct: 320 PWRLSTVHRVEELKSIIRMLPIWAAGIL 347
>06_01_0019 + 208204-208533,208642-208844,208969-209107
Length = 223
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -3
Query: 536 LHAAPPCPWRTGTLHQACQPSEVL-RIRPAMATGLLRWEAQAGQPPSVYPSVQNAVQTAL 360
LHAAPP P T +L Q + E+L + A AT A PP P +Q+ T+L
Sbjct: 103 LHAAPPPPPATCSLQQRGEGEELLPTLLSATATPNTATAAPMAMPP---PPLQHHTTTSL 159
>05_01_0126 + 858259-858489,858641-859189,859545-860162
Length = 465
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 359 GAPSAPHSVLMDIRWEVAQPVPPNGAALWPSPVG 460
GA S P +I W VA + PN A + P P G
Sbjct: 134 GAGSDPAGGAREISWRVALFIDPNAAGVLPLPDG 167
>12_01_0816 + 7502669-7503145
Length = 158
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 498 VAPGLPTLRSVEDPTGDGHRAAPLGGTGWATSQ 400
V G+P + V PTG+ R LG GWA++Q
Sbjct: 119 VGGGVP-MAPVAAPTGEEERGGWLGRLGWASAQ 150
>05_04_0296 -
19943253-19944159,19944239-19945031,19945434-19945496,
19947086-19947182
Length = 619
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 536 LHAAPPCPWRTGTLHQACQPSEVLRIRPAMATGLL 432
L + P WR T+H+ + +LR+ P A G+L
Sbjct: 332 LPSGEPKLWRLSTVHRVEELKSILRMLPIWAAGIL 366
>04_04_0937 -
29515561-29515758,29515914-29516301,29516925-29517091,
29517577-29517783
Length = 319
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 371 APHSVLMDIRWEVAQPVPPNGAALWPSPVGSST 469
AP SV + + + V P P A WP P+ +S+
Sbjct: 2 APASVAVSLSFRVVPPRPCRRRARWPRPIRASS 34
>04_03_1020 -
21761297-21761555,21761630-21761739,21762402-21762635,
21762710-21762817,21762910-21762969,21763549-21763624,
21763710-21763870,21764485-21764547,21764657-21764744,
21765062-21765592,21766344-21766783
Length = 709
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 359 GAPSAPHSVLMDIRWEVAQPVPPNGAALWPSPVGSSTLLR 478
G S PH + + P+PP+ A P P+G +T L+
Sbjct: 260 GLKSPPHPLPLPPGPATCSPLPPSPTAYSPHPLGPTTCLQ 299
>03_01_0522 -
3919120-3919696,3919835-3919919,3919955-3919985,
3920078-3920158,3920271-3920338,3920645-3920698,
3921023-3922379
Length = 750
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 504 WNVAPGLPTLRSVEDPTG 451
+ PGLP+L V+DPTG
Sbjct: 115 YRAGPGLPSLERVQDPTG 132
>07_03_0851 +
22012836-22014017,22016668-22016734,22016774-22016868,
22017304-22017717
Length = 585
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/56 (37%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Frame = +2
Query: 428 NGAALWPSPVGSSTLLRVGRPGATFQCARGMAGPRATAI-RTPFPVNKYETMKFFV 592
NGA L P P SS L PG F R G I RT V MKF +
Sbjct: 231 NGAGLSPPPSSSSPSLVFSSPGRVFSSRRYACGCFCWGILRTMLLVLDTRLMKFSI 286
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,381,324
Number of Sequences: 37544
Number of extensions: 509871
Number of successful extensions: 1926
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1925
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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