Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060259.seq
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    29   4.1  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    29   4.1  
AL021482-1|CAA16338.1|  385|Caenorhabditis elegans Hypothetical ...    28   7.1  
Z46791-4|CAA86758.1|  317|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
           protein K08C7.3b protein.
          Length = 3672

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/86 (22%), Positives = 39/86 (45%)
 Frame = +1

Query: 259 GEPRFSVCPALCGNSLGYPLCNCVHPEEDHAVDWSAVCTAFCTDGYTLGGCPACASQRSS 438
           G+P   +  +L G++   PL +  + +++    WS         G+  G C A  ++ S 
Sbjct: 54  GQPVTEIYCSLTGSTQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGCGHCNA-GNENSH 112

Query: 439 PVAIAGRILNTSEGWQAWCNVPVRQG 516
           P   A  +++ +  W  W + P+ +G
Sbjct: 113 P---AANMVDGNNSW--WMSPPLSRG 133


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
           protein K08C7.3a protein.
          Length = 3704

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/86 (22%), Positives = 39/86 (45%)
 Frame = +1

Query: 259 GEPRFSVCPALCGNSLGYPLCNCVHPEEDHAVDWSAVCTAFCTDGYTLGGCPACASQRSS 438
           G+P   +  +L G++   PL +  + +++    WS         G+  G C A  ++ S 
Sbjct: 54  GQPVTEIYCSLTGSTQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGCGHCNA-GNENSH 112

Query: 439 PVAIAGRILNTSEGWQAWCNVPVRQG 516
           P   A  +++ +  W  W + P+ +G
Sbjct: 113 P---AANMVDGNNSW--WMSPPLSRG 133


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
           chain protein.
          Length = 3704

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/86 (22%), Positives = 39/86 (45%)
 Frame = +1

Query: 259 GEPRFSVCPALCGNSLGYPLCNCVHPEEDHAVDWSAVCTAFCTDGYTLGGCPACASQRSS 438
           G+P   +  +L G++   PL +  + +++    WS         G+  G C A  ++ S 
Sbjct: 54  GQPVTEIYCSLTGSTQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGCGHCNA-GNENSH 112

Query: 439 PVAIAGRILNTSEGWQAWCNVPVRQG 516
           P   A  +++ +  W  W + P+ +G
Sbjct: 113 P---AANMVDGNNSW--WMSPPLSRG 133


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
           protein.
          Length = 3704

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/86 (22%), Positives = 39/86 (45%)
 Frame = +1

Query: 259 GEPRFSVCPALCGNSLGYPLCNCVHPEEDHAVDWSAVCTAFCTDGYTLGGCPACASQRSS 438
           G+P   +  +L G++   PL +  + +++    WS         G+  G C A  ++ S 
Sbjct: 54  GQPVTEIYCSLTGSTQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGCGHCNA-GNENSH 112

Query: 439 PVAIAGRILNTSEGWQAWCNVPVRQG 516
           P   A  +++ +  W  W + P+ +G
Sbjct: 113 P---AANMVDGNNSW--WMSPPLSRG 133


>AL021482-1|CAA16338.1|  385|Caenorhabditis elegans Hypothetical
           protein Y39A1B.1 protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -2

Query: 606 NLDAITKNFIVSYLFTGNGVRIAVARG-PAMPLAHW-NVAPGLPTLRSVE 463
           N+   T+ + +   ++    +     G P +PL HW N +PG PT  S +
Sbjct: 297 NITTFTQPYYIGLSYSNGNWQWDQPNGQPLIPLEHWNNWSPGYPTASSTD 346


>Z46791-4|CAA86758.1|  317|Caenorhabditis elegans Hypothetical
           protein C09G5.5 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 416 PVPPNGAALWPSPVGSSTLLRVGRPGATFQCARGMAGP 529
           P PP  A    SP  +      GRPG + Q +RG+ GP
Sbjct: 169 PGPPGPAGDAGSPGQAGAPGNPGRPGQSGQRSRGLPGP 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,412,728
Number of Sequences: 27780
Number of extensions: 395598
Number of successful extensions: 1226
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)