Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060259.seq
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   6.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   6.3  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 186 PPQTAPPRPKKSTNNTDT 133
           PP+ APP P  S++  D+
Sbjct: 338 PPKPAPPPPPPSSSGPDS 355


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 314 G*PKLLPQSAGHTENRGSPYSRQCC 240
           G PK+ PQS   ++   SPY R  C
Sbjct: 253 GRPKMTPQSLLPSQTGLSPYLRFGC 277


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -3

Query: 434  LRWEAQA-GQPPSVYPSVQNAVQTALQSTAWSSSGCTQLH 318
            +R + QA G PP+      N+    L+   W  +GC  L+
Sbjct: 1492 VRTQGQAPGIPPAATFLSPNSTTLVLRLHVWPDNGCPILY 1531


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -3

Query: 434  LRWEAQA-GQPPSVYPSVQNAVQTALQSTAWSSSGCTQLH 318
            +R + QA G PP+      N+    L+   W  +GC  L+
Sbjct: 1488 VRTQGQAPGIPPAATFLSPNSTTLVLRLHVWPDNGCPILY 1527


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/40 (22%), Positives = 21/40 (52%)
 Frame = -3

Query: 248 QCCWFPPGQTVDLRGSSGCKSRHKPPRQDQRKVQTTRTLH 129
           Q C +     + ++  +  + R +   +DQ +V++T +LH
Sbjct: 163 QYCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSSLH 202


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/40 (22%), Positives = 21/40 (52%)
 Frame = -3

Query: 248 QCCWFPPGQTVDLRGSSGCKSRHKPPRQDQRKVQTTRTLH 129
           Q C +     + ++  +  + R +   +DQ +V++T +LH
Sbjct: 163 QYCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSSLH 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,673
Number of Sequences: 438
Number of extensions: 4912
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)