Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060258.seq
         (687 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.4  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   7.2  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   9.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.5  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   9.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.5  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +3

Query: 396  WSQRTGRKTSLPFHPVNTTIY 458
            W ++TG    L +HP +  ++
Sbjct: 1596 WDKQTGHVAPLYYHPEDEVVF 1616


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -1

Query: 312 SPNSGRGPPPWLTNRAGATG 253
           SP+SG  PP   T   G  G
Sbjct: 273 SPSSGPAPPGDFTENMGTLG 292


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 367 EPKRIESDNTGHSALGGRRRYHFIR 441
           EPKR  +  T H  L   + +H+ R
Sbjct: 232 EPKRQRTAYTRHQILELEKEFHYNR 256


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 367 EPKRIESDNTGHSALGGRRRYHFIR 441
           EPKR  +  T H  L   + +H+ R
Sbjct: 232 EPKRQRTAYTRHQILELEKEFHYNR 256


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 394 YYRFQFF*VHMLF 356
           YY F  F VH+LF
Sbjct: 117 YYAFIIFTVHLLF 129


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 367 EPKRIESDNTGHSALGGRRRYHFIR 441
           EPKR  +  T H  L   + +H+ R
Sbjct: 232 EPKRQRTAYTRHQILELEKEFHYNR 256


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,637
Number of Sequences: 336
Number of extensions: 3213
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)