Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060258.seq
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.16c |||aromatic ring-opening dioxygenase |Schizosacchar...    44   3e-05
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    29   0.48 
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    28   1.5  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   2.5  
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans...    27   3.4  
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...    26   5.9  
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...    26   5.9  
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...    26   5.9  
SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe...    26   5.9  
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...    26   5.9  
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    25   7.8  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   7.8  

>SPBC1709.16c |||aromatic ring-opening dioxygenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 285

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
 Frame = +2

Query: 383 KAIILVTAHWEE--DVVTISSGKHHDLYFDYYGFPPESYKYRYDRQGILNWANRIHEKLK 556
           K II+ +AH+E    V   S    + L++DYYGFP   Y+ ++  +G    A++I   LK
Sbjct: 62  KGIIVFSAHYESRGSVEVYSRDDENPLFYDYYGFPDYLYQIKFHSKGSKRIADQIISALK 121

Query: 557 NSGIDSKLDSKTR 595
              I +K  S  R
Sbjct: 122 EYQIPAKTVSGDR 134


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 438 PVNTTIYTLTTTASPLNHTNTDTT 509
           P  T++ T TTTA P  H N+ TT
Sbjct: 97  PPTTSLNTTTTTAPPTTHVNSTTT 120


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +3

Query: 432 FHPVNTTIYTLTTTASPLNHTNTDTTARES*IGPIEYTKNLKT 560
           ++PV+++  T TT+ S  + T T TTA  S   PI YT    T
Sbjct: 744 YYPVSSSS-TTTTSTSTGSVTTTSTTATASCTLPISYTSTPTT 785


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 410  WEEDVVTISSGKHHDLYFDYYGFPPES-YKYRYD 508
            W+ + +  S GK++     Y+  PP S  KY +D
Sbjct: 2377 WQVNPIDASEGKNNTALLKYHDIPPHSEVKYSWD 2410


>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 461 FDYYGFPPESYKYRYDRQGILNWAN 535
           F+   FP E++  ++DR G+L+ AN
Sbjct: 86  FNSRTFPDENFTLKHDRPGLLSMAN 110


>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 314 KEHAGLTVFLRDEVKKHVNLKELKAIIL 397
           +E   L VFLR+ +K  +N +E+KAI++
Sbjct: 39  RECLPLIVFLRNRLKYALNGREVKAILM 66


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 314 KEHAGLTVFLRDEVKKHVNLKELKAIIL 397
           +E   L VFLR+ +K  +N +E+KAI++
Sbjct: 39  RECLPLIVFLRNRLKYALNGREVKAILM 66


>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 527 WANRIHEKLKNSGIDSKL-DSKTRLGPRSFRSD 622
           +  ++  KL+N GI +K+ DS   +G R  R+D
Sbjct: 553 FVKKLSAKLRNLGISNKIDDSNANIGRRYARND 585


>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 176 SSFYSVYVNIVNEYIKIFHWYFKNNGPV-APAL 271
           SSF       +N+   + +W +KNN P+ +PAL
Sbjct: 195 SSFIRRLGKEINDESSVLYWAYKNNIPIYSPAL 227


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 314 KEHAGLTVFLRDEVKKHVNLKELKAIIL 397
           +E   L VFLR+ +K  +N +E+KAI++
Sbjct: 39  RECLPLIVFLRNRLKYALNGREVKAILM 66


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 426 LPFHPVNTTIYTLTTTASPLNHTNTD 503
           LPF  +NT + T TT A  +N   TD
Sbjct: 297 LPFSEINTQLSTSTTHALMVNILGTD 322


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 314 KEHAGLTVFLRDEVKKHVNLKELKAII 394
           K+  G TV + + VKK + LKE K++I
Sbjct: 674 KQSKGSTVAVEEVVKKLLKLKESKSLI 700


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,255
Number of Sequences: 5004
Number of extensions: 52980
Number of successful extensions: 170
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)