Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060258.seq
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1542 - 38132731-38133297,38134962-38135168,38135451-38135684     38   0.007
01_06_0743 + 31622683-31623723                                         31   1.1  
09_02_0317 + 7186148-7186243,7186406-7186572,7186766-7186878,718...    30   2.0  
08_02_0994 - 23395808-23396920                                         28   6.0  
02_05_0967 - 33148283-33148524,33148602-33148881,33148959-331491...    28   6.0  
02_01_0615 - 4604373-4604537,4604618-4604707,4604871-4604989,460...    28   8.0  

>01_06_1542 - 38132731-38133297,38134962-38135168,38135451-38135684
          Length = 335

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
 Frame = +2

Query: 272 FVNHGGGPLPLLGDKEHAGLTVFLRDEVKKHVNLKEL-KAIILVTAHWEEDVVTISSGK- 445
           F++HG    P L   +      F +  +   V   EL +AI++V+ HWE    T++  + 
Sbjct: 5   FLSHGA---PTLSIDDTIAAQGFFKSWLPAAVAGAELPRAILVVSGHWEAAAPTVNVIRG 61

Query: 446 HHDLYFDYYGFPPESYK 496
           ++D   D+YGFP   YK
Sbjct: 62  NNDTIHDFYGFPKAMYK 78


>01_06_0743 + 31622683-31623723
          Length = 346

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 434 SSGKHHDLYFDYYGFPPESYKYRYDRQGILNWANRI 541
           SSG  H+  +  YG P ESY   Y R+G+ + A+++
Sbjct: 79  SSGGSHNRGYGLYGRPEESYPEAYFRRGVHHDADKL 114


>09_02_0317 +
           7186148-7186243,7186406-7186572,7186766-7186878,
           7187059-7187133,7187215-7187328,7187545-7187612,
           7187690-7187773,7187966-7188019,7188104-7188184,
           7188279-7188372,7188501-7188574,7188656-7188766,
           7188976-7189032,7189119-7189223,7189584-7189687,
           7190021-7190186,7190279-7190416
          Length = 566

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 645 CRGINXKASERKLRGPNLVLESNLESIPEFLS 550
           C G+  +A++ K  G  L+ E  +ESIPE  +
Sbjct: 306 CDGVQARAAQEKYHGVLLISEGLIESIPEMFA 337


>08_02_0994 - 23395808-23396920
          Length = 370

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -1

Query: 306 NSGRGPPPWLTNRAGATGPLFL 241
           N+G GP PWL +R G T  LFL
Sbjct: 178 NAGAGPEPWL-SRHGDTARLFL 198


>02_05_0967 -
           33148283-33148524,33148602-33148881,33148959-33149151,
           33149244-33149324,33149395-33149520,33149758-33150137,
           33150367-33150394,33150816-33150979,33151920-33152039,
           33152168-33152416
          Length = 620

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 228 FTGTLRTMARLLLLYSSTMEVDLCRCW-GTRNTLD 329
           F+   RT AR +L Y++ ME D+C C+ GT   +D
Sbjct: 149 FSSGKRTCARPML-YANDMEEDICSCYCGTIEDID 182


>02_01_0615 -
           4604373-4604537,4604618-4604707,4604871-4604989,
           4605132-4605234,4605318-4605414,4605512-4605575,
           4605673-4605805,4605899-4606143,4606263-4606439,
           4607110-4607419
          Length = 500

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -1

Query: 444 LPDEMVTTSSSQCAVTSIIAFNSFRFTCFLTSSLRNTVSPACSLSPNSGRGPPP 283
           +P   +T  SS  +    +       +C L ++ R   SPA + SP+ G GP P
Sbjct: 1   MPPPPLTPLSSSSSRFFFLLVLVLVLSCSLPANGRTHRSPAAAASPSPGPGPSP 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,596,635
Number of Sequences: 37544
Number of extensions: 337522
Number of successful extensions: 1038
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)