Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060258.seq
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_20247| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)                28   6.2  
SB_2854| Best HMM Match : TUDOR (HMM E-Value=0.00033)                  28   6.2  

>SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2631

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +2

Query: 383 KAIILVTAHWEEDVVTISSGKHHDLYFDYYG---FPPESYKYRYDRQG 517
           K + +    + +  VTIS G +   YFD+YG    P     +RY+R G
Sbjct: 198 KTVYMCVGEYIDVSVTISEGSNVKCYFDFYGDGSSPIGFSSHRYNRTG 245


>SB_20247| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
          Length = 356

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +3

Query: 399 SQRTGRKTSLPFHPVNTTIYTLTTTASPLNHTNTDTTAR 515
           SQ T   T+ PF P      T TTTA P + + + TTAR
Sbjct: 85  SQSTFTTTARPFQP------TFTTTARPKSQSTSTTTAR 117


>SB_2854| Best HMM Match : TUDOR (HMM E-Value=0.00033)
          Length = 359

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 612 KLRGPNLVLESNLESIPEFLSFSCILLAQF 523
           K + PN VL  NL +    LSF  ILL  F
Sbjct: 50  KKKNPNRVLHVNLTTTRHLLSFKAILLTTF 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,066,953
Number of Sequences: 59808
Number of extensions: 385344
Number of successful extensions: 1055
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)