Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060258.seq
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016448-4|AAY86192.1|   91|Caenorhabditis elegans Hypothetical ...    30   1.8  
AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed ...    29   3.1  
AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z81475-3|CAB03909.1|  303|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U23484-9|AAC46771.1|  304|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AL021492-1|CAA16377.1|  179|Caenorhabditis elegans Hypothetical ...    28   7.2  
Z93390-7|CAB07677.1|  931|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z82093-1|CAB05018.1|  229|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U13070-20|AAN63418.1|  641|Caenorhabditis elegans Hypothetical p...    27   9.5  
U13070-18|AAC46635.2|  646|Caenorhabditis elegans Hypothetical p...    27   9.5  
AL032675-2|CAA21780.1|  931|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AF016448-4|AAY86192.1|   91|Caenorhabditis elegans Hypothetical
           protein F41E6.15 protein.
          Length = 91

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 422 VVTISSGKHHDLYFDYYGFPPESYKYRYDRQGIL 523
           V+  +  ++++LY+ YY + P SY Y Y    +L
Sbjct: 28  VIPKAEAQYYNLYYPYYSYYPYSYYYYYPSYYVL 61


>AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed
           with polycystins protein4 protein.
          Length = 402

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 420 TSLPFHPVNTTIYTL-TTTASPLNHTNTDT 506
           T++P +   TT+ T  TTT SPLN T T T
Sbjct: 227 TTVPLNGTTTTVPTNETTTTSPLNGTTTTT 256



 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 426 LPFHPVNTTIYTLTTTASPLNHTNT 500
           +P     TT  T TTT SP+N T T
Sbjct: 184 VPLTTTTTTTTTTTTTTSPMNTTTT 208


>AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical
           protein BE0003N10.3 protein.
          Length = 1145

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 314 KEHAGLTVFLRDEVKKHVNLKELKAIILVTAHWEEDVVTISSGKHHD 454
           K   GL++F R   K HVN +    I+  +   +E+ + ++ G  HD
Sbjct: 170 KNPGGLSIFHRSLQKIHVNYRVFHGILQKSMKKKEENILVTLGVGHD 216


>Z81475-3|CAB03909.1|  303|Caenorhabditis elegans Hypothetical
           protein C24H11.3 protein.
          Length = 303

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
 Frame = +2

Query: 155 YVDYI----NTSSFYSVYVNI-----VNEYIKIFHWY-FKNNGPVAPALFVNHGGGPLPL 304
           ++DYI    +  S YS+Y+++     +        W  F    P+ P  +  H  G    
Sbjct: 42  HLDYIIKGLDPGSLYSIYIHLERVDGIKYKFDAGEWKEFAKGDPILPIQYKEHPRGKRT- 100

Query: 305 LGDKEHAGLTVFLRDEVKKHVNLKELKAIILVTAHWEEDVVTISSGKHH 451
            G +  +    F   ++  +  +K+ K I++ + H    VVT+   +H+
Sbjct: 101 -GAEWMSEPVSFAHIKITNNPEIKDQKVILVQSMHKHIPVVTVKQVRHY 148


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 420 TSLPFHPVNTTIYTLTTTASPLNHTNTDTTARES*IGPIEYTKNLKTP 563
           T+ P  P  TT    TTT++    T T TT + +   P+  T +  TP
Sbjct: 673 TTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTITP 720


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 420 TSLPFHPVNTTIYTLTTTASPLNHTNTDTTARES*IGPIEYTKNLKTP 563
           T+ P  P  TT    TTT++    T T TT + +   P+  T +  TP
Sbjct: 729 TTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTITP 776


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 420 TSLPFHPVNTTIYTLTTTASPLNHTNTDTTARES*IGPIEYTKNLKTP 563
           T+ P  P  TT    TTT++    T T TT + +   P+  T +  TP
Sbjct: 552 TTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVVTTPSTITP 599


>U23484-9|AAC46771.1|  304|Caenorhabditis elegans Hypothetical
           protein EEED8.11 protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
 Frame = +3

Query: 438 PVNTTIYTLTTTASPLNHTNTDTTARES*------IGPIEYTKNLKTP 563
           P  TT  T TTT +P   T T TT           + P  YT  L+TP
Sbjct: 67  PTTTTTTTTTTTTTPTTTTTTTTTTTPEPTTTKVKVCPQGYTSFLRTP 114


>AL021492-1|CAA16377.1|  179|Caenorhabditis elegans Hypothetical
           protein Y45F10D.2 protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 411 GRKTSLPFHPVNTTIYTLTTTASPLNHTNTDTTARE 518
           G  TS+P       + T TTTASP++ T++ T +++
Sbjct: 110 GSSTSMPVRQKRQAVSTTTTTASPMS-TSSPTPSQQ 144


>Z93390-7|CAB07677.1|  931|Caenorhabditis elegans Hypothetical
           protein VT23B5.2 protein.
          Length = 931

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +1

Query: 271 IRQPWRWTSAAVGGQGTRWTNCIPERRS*KACEPKRIESDNTGH 402
           I + W W SA  GG+   W   +  +R    CE K   +D   H
Sbjct: 842 IGRVWCWQSAEGGGRADHWVQDVTRQRC-DDCEHKFTLADRKHH 884


>Z82093-1|CAB05018.1|  229|Caenorhabditis elegans Hypothetical
           protein ZK39.2 protein.
          Length = 229

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 262 SCSIRQPWRWT-SAAVGGQGTRWTNCIPE 345
           SCS    +RWT S+A G  G  W N  P+
Sbjct: 142 SCSTTSSFRWTDSSASGTAGFVWNNVQPD 170


>U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical protein
            C52E12.4 protein.
          Length = 1487

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = -1

Query: 393  IIAFNSFRFTCFLTSSLRNTVSPACSLSPNSGRG--PPPWLTNRAG--ATGPLFLK 238
            I++ N+ +F CF  +  +  +     +   SGRG  P  W+T      +T P+ LK
Sbjct: 1114 ILSLNAAQFRCFTNTFTKTKMDYQVVIVTGSGRGAIPAIWVTVEGSLCSTPPIMLK 1169


>U13070-20|AAN63418.1|  641|Caenorhabditis elegans Hypothetical
           protein F01F1.1c protein.
          Length = 641

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
 Frame = +2

Query: 242 KNNGPVAPAL---FVNHGGGPLPLLG 310
           KNN    P L   FV  GGGP PL+G
Sbjct: 146 KNNSSAFPHLTSTFVPQGGGPQPLMG 171


>U13070-18|AAC46635.2|  646|Caenorhabditis elegans Hypothetical
           protein F01F1.1a protein.
          Length = 646

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
 Frame = +2

Query: 242 KNNGPVAPAL---FVNHGGGPLPLLG 310
           KNN    P L   FV  GGGP PL+G
Sbjct: 151 KNNSSAFPHLTSTFVPQGGGPQPLMG 176


>AL032675-2|CAA21780.1|  931|Caenorhabditis elegans Hypothetical
           protein VT23B5.2 protein.
          Length = 931

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +1

Query: 271 IRQPWRWTSAAVGGQGTRWTNCIPERRS*KACEPKRIESDNTGH 402
           I + W W SA  GG+   W   +  +R    CE K   +D   H
Sbjct: 842 IGRVWCWQSAEGGGRADHWVQDVTRQRC-DDCEHKFTLADRKHH 884


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,340,462
Number of Sequences: 27780
Number of extensions: 298344
Number of successful extensions: 943
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)