Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060258.seq
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.2  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.6  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    23   3.6  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   4.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 447 TTIYTLTTTASPLNHTNTDTT 509
           TTI T+TTT +    T T TT
Sbjct: 656 TTITTITTTTTTTTTTTTTTT 676



 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +3

Query: 420 TSLPFHPVNTTIYTLTTTASPLNHTNTDTT 509
           TSLP     TT  T TTTA+      T  T
Sbjct: 101 TSLPATITTTTTTTTTTTATAAATATTTAT 130


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -2

Query: 626 KHRNENSVVPTSFWNLI*SLYRS 558
           K+RN+N++V   F N++  L ++
Sbjct: 258 KYRNDNNIVRPDFINMLMELQKN 280


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 159 LTILIQVVFIVFMSILSMNILKYFTG 236
           +TILI +VF V  ++ S +  + F G
Sbjct: 3   ITILILLVFTVLATVSSQDYSQLFAG 28


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 5/27 (18%)
 Frame = -1

Query: 318 SLSPNSGRGP-----PPWLTNRAGATG 253
           SL  N G  P     P W  N+AGA G
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKAGACG 124


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = +2

Query: 434 SSGKHHDLYFDYYGFPPES--YKYRYDRQG 517
           +S    DLY    GFPP S   K +  RQG
Sbjct: 414 TSSVSDDLYLLELGFPPRSKKNKLKKPRQG 443


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,056
Number of Sequences: 438
Number of extensions: 3826
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)