Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060258.seq
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15093.1 68417.m02319 catalytic LigB subunit of aromatic ring...    54   9e-08
At4g39970.1 68417.m05661 haloacid dehalogenase-like hydrolase fa...    30   1.7  
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast...    28   6.7  
At1g80820.1 68414.m09482 cinnamoyl-CoA reductase, putative ident...    27   8.8  

>At4g15093.1 68417.m02319 catalytic LigB subunit of aromatic
           ring-opening dioxygenase family contains Pfam PF02900:
           Catalytic LigB subunit of aromatic ring-opening
           dioxygenase
          Length = 269

 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 1/141 (0%)
 Frame = +2

Query: 257 VAPALFVNHGGGPLPLLGDKEHAGLTVFLRDEVKKHVNLKELKAIILVTAHWEEDVVTIS 436
           V    F++HG    P L   +      F +   +K +  K  K+I++++AHW+    +++
Sbjct: 4   VNQTFFLSHGS---PTLSIDDSLEARQFFKSWTQKVLPQKP-KSILVISAHWDTKFPSVN 59

Query: 437 SGKHHDLYFDYYGFPPESYKYRYDRQGILNWANRIHEKLKNSGIDSKLDSKTRLG-PRSF 613
           +   ++   D+ GFP   YK +Y+  G +    R+ E L   G   ++D  T+ G     
Sbjct: 60  TVLRNNTIHDFSGFPDPMYKLKYEAPGAIELGKRVKELLMKEGGMKRVDEDTKRGLDHGA 119

Query: 614 RSDAFXLIPRQDISP*YQLSV 676
                 + P  DI P  QLSV
Sbjct: 120 WVPLMLMYPEADI-PICQLSV 139


>At4g39970.1 68417.m05661 haloacid dehalogenase-like hydrolase
           family protein low similarity to SP|P95649 CbbY protein
           {Rhodobacter sphaeroides}
          Length = 316

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 110 SF*NLDINCFHADS*YVDYINTSSFYSVYVNIVNEYIKIFHWYFKNNGPVAPALF 274
           +F + D+ C  + S  +D+  +  FY  + N+V        WYFK NG     +F
Sbjct: 88  AFSHFDVRCPPSSSESLDW--SLEFYDKFQNLVGGGKPKMRWYFKENGWPTSTIF 140


>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
           plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
           to plastidic lipoamide dehydrogenase from Arabidopsis
           thaliana [gi:7159282]
          Length = 570

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
 Frame = +2

Query: 503 YDRQGILNWANRIHEKLKNS--------GIDSKLDSKTRLGPRSFRSDAFXLIPRQDI 652
           YDRQG+ + AN +  K++N+        G+D      + LGP+  +     +I  +DI
Sbjct: 163 YDRQGVADHANNLATKIRNNLTNSMKAIGVDILTGFGSVLGPQKVKYGKDNIITAKDI 220


>At1g80820.1 68414.m09482 cinnamoyl-CoA reductase, putative
           identical to CCR2 (GI:12407990), similar to cinnamoyl
           CoA reductase from Eucalyptus gunnii [GI:2058311]
          Length = 332

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +3

Query: 141 MLILNTLTILIQVVFIVFMSILSMNILKYFTGTLRTMARLLLLYSSTMEVDL 296
           +++LN + +L   +     + L ++ILKY TG+ +T A L  +Y    +V L
Sbjct: 178 LVVLNPVLVLGPPLQSAINASL-VHILKYLTGSAKTYANLTQVYVDVRDVAL 228


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,488,866
Number of Sequences: 28952
Number of extensions: 277237
Number of successful extensions: 748
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)