Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060257.seq
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 28 1.5
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 28 1.5
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces... 27 1.9
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 27 1.9
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 27 2.5
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces... 27 3.4
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 26 5.9
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 26 5.9
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch... 25 7.8
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 100 FITTRYFLLCHFFYLILSQANGVAKHFTNFPRA 2
F+ +++++L F YL LS A A F N +A
Sbjct: 365 FLDSKFYVLIDFLYLYLSIARESADDFANITKA 397
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 27.9 bits (59), Expect = 1.5
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Frame = +1
Query: 256 PQDWTSRIVAKLSPYINVDSPSATVRQRHEDYLN-----EELSYCRGLGVPAIMISIHGR 420
P ++RI A SP ++ + + + +L+ EEL GL + I +GR
Sbjct: 2039 PSIESARIAANFSPVPIINGGNGSKEHPTQAFLDLYTIREELGSVNGLTITFIGDLKYGR 2098
Query: 421 ESNNLARILQTYYETSHHPSLIWACVPMLLVEHIE-NALKMMKKRKL 558
++LAR+L ++ H S +P + + I N L ++ R+L
Sbjct: 2099 TVHSLARLLAFWHVELHLVSPEQLALPDDVKDDIRANGLNFIEHREL 2145
>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +1
Query: 394 AIMISIHGRESNNLARILQTYYETSHHPSLIWACVPMLLVEHIENALKMMKKRKLWE 564
AI I + + N L I QT T P +IW+C +++H + + + R + E
Sbjct: 39 AIEIEVEKKLLNRLKSI-QT--NTFERPDIIWSCCHYKIIQHFRSRFREIHPRHVVE 92
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +1
Query: 337 RHEDYLNEELSYCRGLGVPAI----MISIHGRESNNLARILQTYYETSHHPSLIWACVPM 504
RH D +N+ L + G+G+P I + I+ E NL +++ + S+ S+ P+
Sbjct: 99 RHSDNINKFLDFIHGIGLPEIFHFELTDIY--EGKNLPKVIYCIHALSYFLSMQDLAPPL 156
Query: 505 L 507
+
Sbjct: 157 I 157
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 639 KTTPNTFIPNSKALME-IWDHQYQGSFPKLSLLHHLQCILYMFY 511
+T + + N +AL + + D+ G FP L+HH+ +LY +Y
Sbjct: 142 QTAVSHLLRNHQALFKYLCDYLRSGEFPLTVLIHHV--MLYQYY 183
>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 550 RKLWE*ALVLVVPNFHERLGIGDKRVGCCFWS 645
+KLW + L PN ++RLG+ D G WS
Sbjct: 323 KKLWRKGVALRPPNIYQRLGLIDAN-GHVDWS 353
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +2
Query: 98 EYIITADLQTCLTEALQCSYSFIV-SPIIH 184
E+I +L T L E L+C Y I +P +H
Sbjct: 395 EFISNTNLPTILPEILECFYDNITYTPFVH 424
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +3
Query: 408 NTREREQQFSQNTPNLL*NEPPSVSNMGMCTYAISR---TYRECTEDDEEE 551
N R F +N P L+ N+P YA++ TYR+ +D ++
Sbjct: 550 NARRIVNYFKKNIPELIPNDPSDDDYAAALNYAVNEYVPTYRKTFGNDSKK 600
>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 333
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 265 WTSRIVAKLSPYINVDSPSATVRQR--HEDYLNEELSYCRGLGVPAI 399
WT K +++VDS + + +E +++SYC G G+ ++
Sbjct: 192 WTEVYSNKQQRWVHVDSGEESFDEPLIYEQGWGKKMSYCLGFGIDSV 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,916
Number of Sequences: 5004
Number of extensions: 66929
Number of successful extensions: 187
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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