Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060257.seq
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0406 - 17688069-17690643,17691065-17691132                       31   0.86 
07_03_1568 - 27788314-27788619,27789125-27789294,27789868-277899...    31   1.1  
03_06_0025 - 31110027-31110507,31111640-31111804,31113134-31113432     31   1.1  
12_02_0929 - 24493168-24493458,24493545-24493643,24493768-244938...    29   3.5  
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817           28   8.0  

>10_08_0406 - 17688069-17690643,17691065-17691132
          Length = 880

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 406 SIHGRESNNLARILQTYYETSHHPSLIWACVPMLLVEHI 522
           ++H   S N+ R++ TY+  +H P L W C  ++ V  +
Sbjct: 554 TVHVFSSWNIVRMVCTYHRAAHRPWLRWLCFLVIRVRFL 592


>07_03_1568 -
           27788314-27788619,27789125-27789294,27789868-27789979,
           27790063-27790117,27790201-27790316,27790731-27790812,
           27790974-27791228,27791326-27791454,27791539-27791747
          Length = 477

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +1

Query: 262 DWTSRIVAKLSPYINVDSPSATVRQRHEDYLNEE--LSYCRGLGVPAIMISIH 414
           DW SR++A    Y+ +D P+AT      D + E   +   R LG+   +++ H
Sbjct: 203 DWKSRVIAVTDNYVVLDKPAATSVGGATDNIEESCVVFTSRALGLETPLMTTH 255


>03_06_0025 - 31110027-31110507,31111640-31111804,31113134-31113432
          Length = 314

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/75 (24%), Positives = 32/75 (42%)
 Frame = +1

Query: 310 DSPSATVRQRHEDYLNEELSYCRGLGVPAIMISIHGRESNNLARILQTYYETSHHPSLIW 489
           D PS  +      + +   S+ RG+G  A+   IHG  +  LA  +  +      P +++
Sbjct: 176 DDPSVVITTYEGQHCHHTASFQRGVGGAAVAAHIHGAAAVALAEQMSAFVSPPPQPHMLY 235

Query: 490 ACVPMLLVEHIENAL 534
             +P L     E A+
Sbjct: 236 G-LPRLHPPSSETAV 249


>12_02_0929 -
           24493168-24493458,24493545-24493643,24493768-24493872,
           24494101-24494193,24494438-24494530,24494646-24494699,
           24494816-24494917,24495058-24495132,24495245-24495418
          Length = 361

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 171 RPLFTHVFVGNPQMPVKMVVLRGQIWF 251
           R L T +FVGNP   + M  ++   WF
Sbjct: 252 RDLITRIFVGNPASRITMPEIKNHPWF 278


>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
          Length = 883

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 501 YAISRTYRECTEDDEEEKALGMSPGTGGPKF 593
           Y + R   E T DD   + +G S  TGGP F
Sbjct: 799 YLVQRRAIEATVDDTPWEMIGRSRKTGGPMF 829


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,817,833
Number of Sequences: 37544
Number of extensions: 419098
Number of successful extensions: 955
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)