Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060257.seq
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_25625| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_49906| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_25298| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_46046| Best HMM Match : DUF164 (HMM E-Value=0.38)                   28   8.1  
SB_42612| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +1

Query: 352 LNEELSYCRGLGVPAIMISIHGRESNNLARILQTYYETSHHPSLIWACVPM 504
           L +E++Y   LG+P++M+ +      NLA  +      SH   L W  VPM
Sbjct: 118 LMQEVNYAIHLGLPSVMLELGNYNIINLAHYVNDILINSHVQQL-WIKVPM 167


>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1778

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 649 DNSKNNTQHVYPQFQGAHGNLGPPVP 572
           D S++NT  VY QFQG   N+ PP P
Sbjct: 184 DTSQSNTAQVYQQFQG--NNVSPPNP 207


>SB_25625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/52 (23%), Positives = 30/52 (57%)
 Frame = +2

Query: 59  IKKMAQQEISCGYEYIITADLQTCLTEALQCSYSFIVSPIIHPRFRRQSTNA 214
           +K    +  +  + +++TADL++ LTE+   S++++++  + P      T+A
Sbjct: 41  LKSALTESHTDSFTWLLTADLKSALTESHTDSFTWLLTADLKPALTESHTDA 92


>SB_49906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 47

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 74  QQEISCGYEYIITADLQTCLTEALQCSYSFIVSP 175
           QQ+I+ GYE +  A L +C T+ +Q +   ++ P
Sbjct: 8   QQQITTGYESVAFAILSSCRTQFMQITDRILLYP 41


>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2839

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 662  KESGRQLQKQHPTRLSPIPRR 600
            KES  Q +++ PTR SP PRR
Sbjct: 1981 KESMSQFEQEEPTRQSPSPRR 2001


>SB_25298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 296 GDSLATILLVQS*GIEPYLTA*NHHFYRH 210
           G  +AT L+  S  I PY+ A NH  YR+
Sbjct: 650 GSIIATYLIFLSSAINPYIYAFNHRSYRN 678


>SB_46046| Best HMM Match : DUF164 (HMM E-Value=0.38)
          Length = 221

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 671 VEWKESGRQLQKQHPTRLSPIPRRSWKFGTTST 573
           +E +E    L  Q+PT L+P+  R+W   TT+T
Sbjct: 110 LEAEERRLNLAMQNPTPLAPLRSRTWHSITTTT 142


>SB_42612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 671 VEWKESGRQLQKQHPTRLSPIPRRSWKFGTTST 573
           +E +E    L  Q+PT L+P+  R+W   TT+T
Sbjct: 369 LEAEERRLNLAMQNPTPLAPLRSRTWHSITTTT 401


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,982,491
Number of Sequences: 59808
Number of extensions: 486286
Number of successful extensions: 1194
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)