Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060257.seq
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   4.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.8  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   8.3  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   8.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   8.3  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   8.3  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 613 QFQGAHGNLGPPVPGLIPKA 554
           Q QG+H    PP+P  I +A
Sbjct: 97  QVQGSHIPTAPPIPPEIQRA 116


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 541 MKKRKLWE*ALVLVVPNFHE 600
           ++K  LW  A+ L + +FHE
Sbjct: 769 LQKGSLWADAVTLAILDFHE 788


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 402 DINTREREQQFSQNTPNLL*NEPPSVSNMGMCTYAISRT 518
           + N  ER    S   P+L+ +EP  V+  G  T +  RT
Sbjct: 257 ETNHNERSTPRSHAKPSLIDDEPTEVTIGGGGTTSSRRT 295


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 402 DINTREREQQFSQNTPNLL*NEPPSVSNMGMCTYAISRT 518
           + N  ER    S   P+L+ +EP  V+  G  T +  RT
Sbjct: 257 ETNHNERSTPRSHAKPSLIDDEPTEVTIGGGGTTSSRRT 295


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 654 WQTTPKTTPNTFI 616
           W T  +  PNTFI
Sbjct: 324 WDTNTELNPNTFI 336


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 402 DINTREREQQFSQNTPNLL*NEPPSVSNMGMCTYAISRT 518
           + N  ER    S   P+L+ +EP  V+  G  T +  RT
Sbjct: 257 ETNHNERSTPRSHAKPSLIDDEPTEVTIGGGGTTSSRRT 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,072
Number of Sequences: 438
Number of extensions: 4800
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)