Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060257.seq
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13890.3 68418.m01625 expressed protein contains Pfam profile...    30   1.7  
At5g13890.2 68418.m01624 expressed protein contains Pfam profile...    30   1.7  
At5g13890.1 68418.m01623 expressed protein contains Pfam profile...    30   1.7  
At4g21770.1 68417.m03150 pseudouridine synthase family protein c...    30   1.7  
At5g57970.1 68418.m07253 methyladenine glycosylase family protei...    29   2.2  
At3g60810.2 68416.m06803 expressed protein                             27   8.8  

>At5g13890.3 68418.m01625 expressed protein contains Pfam profile
           PF04819: Family of unknown function (DUF716) (Plant
           viral-response family)
          Length = 310

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 85  YFLLCHFFYLILSQANGVAKHFTNFPR 5
           Y L+C FF+L+ S  +  AK F  FPR
Sbjct: 20  YHLICTFFHLLKSPQSYAAKPFYPFPR 46


>At5g13890.2 68418.m01624 expressed protein contains Pfam profile
           PF04819: Family of unknown function (DUF716) (Plant
           viral-response family)
          Length = 310

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 85  YFLLCHFFYLILSQANGVAKHFTNFPR 5
           Y L+C FF+L+ S  +  AK F  FPR
Sbjct: 20  YHLICTFFHLLKSPQSYAAKPFYPFPR 46


>At5g13890.1 68418.m01623 expressed protein contains Pfam profile
           PF04819: Family of unknown function (DUF716) (Plant
           viral-response family)
          Length = 310

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 85  YFLLCHFFYLILSQANGVAKHFTNFPR 5
           Y L+C FF+L+ S  +  AK F  FPR
Sbjct: 20  YHLICTFFHLLKSPQSYAAKPFYPFPR 46


>At4g21770.1 68417.m03150 pseudouridine synthase family protein
           contains Pfam profile PF00849: RNA pseudouridylate
           synthase
          Length = 472

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 262 DWTSRIVAKLSPYINVDSPSATVRQRHEDYLNEELS--YCRGLGVPAIMISIH 414
           DW SRIVA    Y+ +D P+ T      D + E  +    R L +P  + + H
Sbjct: 206 DWKSRIVAVTDSYVILDKPAGTTVGGTTDNIEESCATFASRALDLPEPLKTTH 258


>At5g57970.1 68418.m07253 methyladenine glycosylase family protein
           similar to SP|P05100 DNA-3-methyladenine glycosylase I
           (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
           constitutive) {Escherichia coli}; contains Pfam profile
           PF03352: Methyladenine glycosylase
          Length = 347

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 319 SATVRQRHEDYLNEELSYCRGLGVPAIMISIHGRESNNLARILQTY 456
           +A++ +RHE  LN  LS        A M S H R S    R++++Y
Sbjct: 78  AASILRRHEQNLNSNLSLNASFSSDASMDSFHSRAST--GRLIRSY 121


>At3g60810.2 68416.m06803 expressed protein 
          Length = 209

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
 Frame = +1

Query: 181 SPTFS*AIHKCR*KWWFYAVRY-GSIPQ---DWTSRIVAKLSPYINVDSPSATVRQRHED 348
           SPT     HKCR K  FYA R   SIP+   D   +++ + S  + +      +  +  D
Sbjct: 6   SPTTCLYHHKCRRKLVFYARRISASIPETSYDKHPKLIGRRSSELAMIGAIFQLSGKKPD 65

Query: 349 YL----NEELSYC 375
           YL    NE L+ C
Sbjct: 66  YLGVQKNERLALC 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,098,164
Number of Sequences: 28952
Number of extensions: 342656
Number of successful extensions: 839
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)