Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060256.seq
         (672 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6Q3T2 Cluster: Putative uncharacterized protein; n=1; ...    35   2.1  
UniRef50_A2F481 Cluster: Putative uncharacterized protein; n=1; ...    34   2.7  
UniRef50_Q54DG0 Cluster: SNF2-related domain-containing protein;...    33   4.8  
UniRef50_Q5ZS99 Cluster: Chromosome segregation SMC protein; n=4...    33   6.3  
UniRef50_Q22YZ9 Cluster: Tubulin/FtsZ family, GTPase domain cont...    33   6.3  
UniRef50_Q17GQ1 Cluster: Putative uncharacterized protein; n=2; ...    33   8.3  

>UniRef50_A6Q3T2 Cluster: Putative uncharacterized protein; n=1;
           Nitratiruptor sp. SB155-2|Rep: Putative uncharacterized
           protein - Nitratiruptor sp. (strain SB155-2)
          Length = 490

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 16/53 (30%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
 Frame = +2

Query: 374 ETMASCYKKRRLEHEESEDKITVTDKSMNSITHSGEDSKNRKK-LKQMLKMKE 529
           E + S YK+ RL+++++  KI   DK+   + H  +  K++K+ LK+ ++ K+
Sbjct: 243 EELKSYYKQNRLKYKDANGKILPFDKAKKQVMHDLDIKKSKKEALKKYIQFKK 295


>UniRef50_A2F481 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 376

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +2

Query: 377 TMASCYKKRRLEHEESEDKITVTDKSMNSITHSG-EDSKNRKKLKQMLKMKEILXLN*SN 553
           T  S   ++  E++   DKI +TD + +S T S  ++ KN  K+K+    KE +  N +N
Sbjct: 40  TQKSQNAQQSQENQTKTDKIRITDTNTSSSTLSAVKEEKNNNKIKEKEVQKESITKNPTN 99

Query: 554 TRLILKSTXAPKANGYGKNT 613
               +K T   K     K T
Sbjct: 100 PTKEVKPTPNKKRKSIIKVT 119


>UniRef50_Q54DG0 Cluster: SNF2-related domain-containing protein;
           n=1; Dictyostelium discoideum AX4|Rep: SNF2-related
           domain-containing protein - Dictyostelium discoideum AX4
          Length = 2129

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 21/68 (30%), Positives = 29/68 (42%)
 Frame = +2

Query: 392 YKKRRLEHEESEDKITVTDKSMNSITHSGEDSKNRKKLKQMLKMKEILXLN*SNTRLILK 571
           YKK    H  S+     TDK    +  S +D  + K  ++ LKM + L     N R + K
Sbjct: 682 YKKMLANHARSKKSKKETDKIFRELELSDDDVFDEKNDRKQLKMMKRLMDREDNDRRVKK 741

Query: 572 STXAPKAN 595
               PK N
Sbjct: 742 KMVDPKYN 749


>UniRef50_Q5ZS99 Cluster: Chromosome segregation SMC protein; n=4;
           Legionella pneumophila|Rep: Chromosome segregation SMC
           protein - Legionella pneumophila subsp. pneumophila
           (strain Philadelphia 1 /ATCC 33152 / DSM 7513)
          Length = 1164

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = +2

Query: 380 MASCYKKRRLEHEESEDKITVTDKSMNSITHSGED-SKNRKKLKQMLKMKEIL 535
           + SCYK+R + +E+ +D I  +    +S+ HSG D ++  + ++Q  + K+ L
Sbjct: 265 LTSCYKERAVLNEQLQDAIDQSQSIQDSLYHSGTDIARLEEAIQQQEREKKRL 317


>UniRef50_Q22YZ9 Cluster: Tubulin/FtsZ family, GTPase domain
           containing protein; n=1; Tetrahymena thermophila
           SB210|Rep: Tubulin/FtsZ family, GTPase domain containing
           protein - Tetrahymena thermophila SB210
          Length = 498

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -1

Query: 210 GFVSRQCTGLNLSLPMYLLCLCNKFLFRLY*VFNTLVLIYSKIIDRKLITEHYT 49
           GF    C    +  P  LLCL N    R    F+T+V  ++K+  RK+   HYT
Sbjct: 406 GFKYGICNTPPIGQPYSLLCLANNTAIRDQ--FSTMVERFNKLYKRKVFVHHYT 457


>UniRef50_Q17GQ1 Cluster: Putative uncharacterized protein; n=2;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 248

 Score = 32.7 bits (71), Expect = 8.3
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 401 RRLEHEESEDKITVTDKSMNSITHSGEDSKNRKKLK 508
           +RLEH   ED+     K++ S T   ED KN KK +
Sbjct: 84  QRLEHHRPEDQRPEDQKTIRSETRGSEDQKNDKKTR 119


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 511,065,497
Number of Sequences: 1657284
Number of extensions: 8422734
Number of successful extensions: 19881
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19858
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)