Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060256.seq
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    30   0.26 
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    27   2.5  
SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.3  
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    25   7.5  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   9.9  

>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +2

Query: 395 KKRRLEHEESEDKITVTDKSMNSITHSGEDSKNRKKLKQML 517
           K RR + +E ED++   +KS N ++ + ED+KN   + Q L
Sbjct: 21  KNRRRQFQE-EDQLRRNNKSSNKLSQNEEDAKNMDSVVQKL 60


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/52 (23%), Positives = 31/52 (59%)
 Frame = +2

Query: 374 ETMASCYKKRRLEHEESEDKITVTDKSMNSITHSGEDSKNRKKLKQMLKMKE 529
           + +AS  +KR+++ ++ +  +  ++  +     S +DS+++KK K+ LK  +
Sbjct: 19  KNVASHGEKRKVKRKKEDLSMDGSNDGVKDSPDSNDDSQSKKKKKKKLKKSQ 70


>SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 325

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 457 ELYNSQWRRLKKQKEAQTDV 516
           +LY SQ R+LK + ++QTD+
Sbjct: 99  DLYRSQQRKLKSRWDSQTDI 118


>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +2

Query: 392 YKKRRLEHEESEDKITVTDKSMNSITHSGEDSKNRKKLKQMLK 520
           Y + ++EHE+  D+IT       +I    EDS+ ++KL++  K
Sbjct: 50  YARSKIEHEDFLDRIT------QNIKIDEEDSQAKEKLEEFKK 86


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 368 PCETMASCYKKRRLEHEESEDKITVTDKSMNSITHSGEDSK 490
           P ET    + K  +E E  +D    +D+S  S    G DSK
Sbjct: 855 PSETPPFSFNKPLVEKESKQDVSDTSDRSPFSFKAFGIDSK 895


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,972
Number of Sequences: 5004
Number of extensions: 40419
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)