Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060256.seq
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)                28   6.0  
SB_22488| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 416 EESEDKITVTDKSMNSITHSGEDSKNRKK 502
           + S+DKI + DKS NSI+ +    K RKK
Sbjct: 117 KNSQDKININDKSKNSISRNLTKIKKRKK 145


>SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
          Length = 779

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 392 YKKRRLEHEESEDKITVTDKSMNSITHSGEDSKNRKKLKQMLK--MKEILXLN*SNTRLI 565
           YKK+ LEH E + ++    + +   T   + S+N  K  Q +   + E+L    +  + I
Sbjct: 14  YKKKLLEHRELDARLKEMREQLKDFTKEYDKSENDLKALQSVGQIVGEVLK-QLTEEKFI 72

Query: 566 LKSTXAPK 589
           +K+T  P+
Sbjct: 73  VKATNGPR 80


>SB_22488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 354

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 404 RLEHEESEDKI-TVTDKSMNSITHSGEDSKNRKKLKQ 511
           RL+H E +  +  V++ S     HSG+  K +KK K+
Sbjct: 224 RLDHVEEDASLHVVSESSSTDSCHSGKPKKKKKKKKR 260


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,765,402
Number of Sequences: 59808
Number of extensions: 263583
Number of successful extensions: 599
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)