Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060256.seq
         (672 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D78275-1|BAA11338.1|  389|Homo sapiens proteasome subunit p42 pr...    30   8.7  
CR456709-1|CAG32990.1|  389|Homo sapiens PSMC6 protein.                30   8.7  
BT006843-1|AAP35489.1|  389|Homo sapiens proteasome (prosome, ma...    30   8.7  
BC005390-1|AAH05390.1|  389|Homo sapiens proteasome (prosome, ma...    30   8.7  
AF006305-1|AAB61616.1|  389|Homo sapiens 26S proteasome regulato...    30   8.7  

>D78275-1|BAA11338.1|  389|Homo sapiens proteasome subunit p42
           protein.
          Length = 389

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +2

Query: 392 YKKRRLEHEESEDKITVTDKSMNSITHSGEDSKNRKKLKQMLK--MKEILXLN*SNTRLI 565
           Y+K+ LEH+E + ++    + +  +T   E S+N  K  Q +   + E+L    +  + I
Sbjct: 12  YRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLK-QLTEEKFI 70

Query: 566 LKSTXAPK 589
           +K+T  P+
Sbjct: 71  VKATNGPR 78


>CR456709-1|CAG32990.1|  389|Homo sapiens PSMC6 protein.
          Length = 389

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +2

Query: 392 YKKRRLEHEESEDKITVTDKSMNSITHSGEDSKNRKKLKQMLK--MKEILXLN*SNTRLI 565
           Y+K+ LEH+E + ++    + +  +T   E S+N  K  Q +   + E+L    +  + I
Sbjct: 12  YRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLK-QLTEEKFI 70

Query: 566 LKSTXAPK 589
           +K+T  P+
Sbjct: 71  VKATNGPR 78


>BT006843-1|AAP35489.1|  389|Homo sapiens proteasome (prosome,
           macropain) 26S subunit, ATPase, 6 protein.
          Length = 389

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +2

Query: 392 YKKRRLEHEESEDKITVTDKSMNSITHSGEDSKNRKKLKQMLK--MKEILXLN*SNTRLI 565
           Y+K+ LEH+E + ++    + +  +T   E S+N  K  Q +   + E+L    +  + I
Sbjct: 12  YRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLK-QLTEEKFI 70

Query: 566 LKSTXAPK 589
           +K+T  P+
Sbjct: 71  VKATNGPR 78


>BC005390-1|AAH05390.1|  389|Homo sapiens proteasome (prosome,
           macropain) 26S subunit, ATPase, 6 protein.
          Length = 389

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +2

Query: 392 YKKRRLEHEESEDKITVTDKSMNSITHSGEDSKNRKKLKQMLK--MKEILXLN*SNTRLI 565
           Y+K+ LEH+E + ++    + +  +T   E S+N  K  Q +   + E+L    +  + I
Sbjct: 12  YRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLK-QLTEEKFI 70

Query: 566 LKSTXAPK 589
           +K+T  P+
Sbjct: 71  VKATNGPR 78


>AF006305-1|AAB61616.1|  389|Homo sapiens 26S proteasome regulatory
           subunit protein.
          Length = 389

 Score = 29.9 bits (64), Expect = 8.7
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +2

Query: 392 YKKRRLEHEESEDKITVTDKSMNSITHSGEDSKNRKKLKQMLK--MKEILXLN*SNTRLI 565
           Y+K+ LEH+E + ++    + +  +T   E S+N  K  Q +   + E+L    +  + I
Sbjct: 12  YRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLK-QLTEEKFI 70

Query: 566 LKSTXAPK 589
           +K+T  P+
Sbjct: 71  VKATNGPR 78


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,695,182
Number of Sequences: 237096
Number of extensions: 1163662
Number of successful extensions: 1929
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1929
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)