Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060256.seq
         (672 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071182-1|AAL48804.1|  397|Drosophila melanogaster RE23388p pro...    29   7.6  
AF145310-1|AAF08391.1|  390|Drosophila melanogaster 26S proteaso...    29   7.6  
AE014298-869|AAF46146.2|  390|Drosophila melanogaster CG3455-PA ...    29   7.6  

>AY071182-1|AAL48804.1|  397|Drosophila melanogaster RE23388p
           protein.
          Length = 397

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +2

Query: 392 YKKRRLEHEESEDKITVTDKSMNSITHSGEDSKNRKKLKQMLK--MKEILXLN*SNTRLI 565
           Y+K+ LEH+E E ++    + +  +T   + S+N  K  Q +   + E+L    +  + I
Sbjct: 20  YRKKLLEHKEIEGRLKEKREEIKDLTKLYDKSENDLKALQSVGQIVGEVLK-QLTEDKFI 78

Query: 566 LKSTXAPK 589
           +K+T  P+
Sbjct: 79  VKATNGPR 86


>AF145310-1|AAF08391.1|  390|Drosophila melanogaster 26S proteasome
           regulatory complexsubunit p42D protein.
          Length = 390

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +2

Query: 392 YKKRRLEHEESEDKITVTDKSMNSITHSGEDSKNRKKLKQMLK--MKEILXLN*SNTRLI 565
           Y+K+ LEH+E E ++    + +  +T   + S+N  K  Q +   + E+L    +  + I
Sbjct: 13  YRKKLLEHKEIEGRLKEKREEIKDLTKLYDKSENDLKALQSVGQIVGEVLK-QLTEDKFI 71

Query: 566 LKSTXAPK 589
           +K+T  P+
Sbjct: 72  VKATNGPR 79


>AE014298-869|AAF46146.2|  390|Drosophila melanogaster CG3455-PA
           protein.
          Length = 390

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +2

Query: 392 YKKRRLEHEESEDKITVTDKSMNSITHSGEDSKNRKKLKQMLK--MKEILXLN*SNTRLI 565
           Y+K+ LEH+E E ++    + +  +T   + S+N  K  Q +   + E+L    +  + I
Sbjct: 13  YRKKLLEHKEIEGRLKEKREEIKDLTKLYDKSENDLKALQSVGQIVGEVLK-QLTEDKFI 71

Query: 566 LKSTXAPK 589
           +K+T  P+
Sbjct: 72  VKATNGPR 79


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,425,556
Number of Sequences: 53049
Number of extensions: 376223
Number of successful extensions: 917
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2910007350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)