Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060256.seq
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of ...    29   4.0  
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ...    29   4.0  
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ...    29   4.0  
U00040-5|AAA50666.1|  934|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U53154-10|AAC25849.1|  142|Caenorhabditis elegans Hypothetical p...    28   6.9  
U39849-10|AAA81054.3|  951|Caenorhabditis elegans Glutamate rece...    28   6.9  
Z98866-15|CAB11554.2|  335|Caenorhabditis elegans Hypothetical p...    27   9.2  
AF047663-6|AAC04447.1|  368|Caenorhabditis elegans Hypothetical ...    27   9.2  

>U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of
           potassium channelsprotein 11, isoform c protein.
          Length = 1375

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +2

Query: 398 KRRLEHEESEDKITVTDKSMNSITHSGEDSKNRKKLKQMLKMK 526
           ++R E +ES+D+ T  D      T SG++ K RKK K++   K
Sbjct: 724 EKRSEEKESKDQETNDDLK----TESGQEKKRRKKKKKLRSKK 762


>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
           potassium channelsprotein 11, isoform a protein.
          Length = 1544

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +2

Query: 398 KRRLEHEESEDKITVTDKSMNSITHSGEDSKNRKKLKQMLKMK 526
           ++R E +ES+D+ T  D      T SG++ K RKK K++   K
Sbjct: 724 EKRSEEKESKDQETNDDLK----TESGQEKKRRKKKKKLRSKK 762


>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
           potassium channelsprotein 11, isoform b protein.
          Length = 1720

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +2

Query: 398 KRRLEHEESEDKITVTDKSMNSITHSGEDSKNRKKLKQMLKMK 526
           ++R E +ES+D+ T  D      T SG++ K RKK K++   K
Sbjct: 724 EKRSEEKESKDQETNDDLK----TESGQEKKRRKKKKKLRSKK 762


>U00040-5|AAA50666.1|  934|Caenorhabditis elegans Hypothetical
           protein C18H2.4 protein.
          Length = 934

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = -3

Query: 400 FFITACHSFTGLYLSFHLSVRLTLKLIRN 314
           FF+T C +    +++F  ++RL+LKLIRN
Sbjct: 393 FFLT-CIAKVVTFMTFGFNIRLSLKLIRN 420


>U53154-10|AAC25849.1|  142|Caenorhabditis elegans Hypothetical
           protein C33G8.3 protein.
          Length = 142

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 395 KKRRLEHEESEDKITVTDKSMNSITHSGEDSKNRKKLKQ 511
           KK+  + EE EDK     K  +S   S E++K RK  ++
Sbjct: 103 KKKNKDSEEEEDKKKDKKKKNDSSDESEEENKKRKNKRK 141


>U39849-10|AAA81054.3|  951|Caenorhabditis elegans Glutamate
           receptor family (ampa)protein 4 protein.
          Length = 951

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 413 HEESEDKITVTDKSMNSITHSGEDSKNRKKLKQM 514
           HE    K+T+  K M+    +  DSK R KL+ M
Sbjct: 827 HEAFRLKLTIVGKFMDWYRGNSNDSKQRSKLRNM 860


>Z98866-15|CAB11554.2|  335|Caenorhabditis elegans Hypothetical
           protein Y49E10.18 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 430 VLRFFMFKSPFFITACHSFTGLYLSF 353
           +L FF  K PFF  A H FT  Y +F
Sbjct: 147 ILDFFTGKKPFFNDAGHIFTYFYDAF 172


>AF047663-6|AAC04447.1|  368|Caenorhabditis elegans Hypothetical
           protein W09G12.7 protein.
          Length = 368

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/45 (33%), Positives = 29/45 (64%)
 Frame = +2

Query: 395 KKRRLEHEESEDKITVTDKSMNSITHSGEDSKNRKKLKQMLKMKE 529
           KK++ + ++S++K + +D S +S   S +D K +KK K+  K K+
Sbjct: 158 KKKKKKSKKSKNKGSSSDSS-DSSDDSSDDEKPKKKKKKSKKPKK 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,260,708
Number of Sequences: 27780
Number of extensions: 218474
Number of successful extensions: 516
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)