Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060256.seq
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78955.1 68414.m09205 beta-amyrin synthase, putative similar ...    29   3.7  
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4...    28   6.5  
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains...    28   6.5  
At3g19250.1 68416.m02442 hypothetical protein                          28   6.5  
At5g56360.1 68418.m07034 calmodulin-binding protein similar to a...    27   8.6  
At5g41020.1 68418.m04986 myb family transcription factor contain...    27   8.6  
At4g31550.1 68417.m04479 WRKY family transcription factor contai...    27   8.6  
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun...    27   8.6  

>At1g78955.1 68414.m09205 beta-amyrin synthase, putative similar to
           beta-Amyrin Synthase GI:3688600 from [Panax ginseng] and
           GI:8918271 from [Pisum sativum]
          Length = 769

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +2

Query: 374 ETMASCYKKRRLEHEESEDKITVTDKSMNSITHSGEDSKNRKKLKQMLKM 523
           E+  SC KKR +  E     +  T  +M  + H+G+  ++   L +  K+
Sbjct: 660 ESYLSCPKKRYIPSEGERSNLVQTSWAMMGLLHAGQAERDPSPLHRAAKL 709


>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
           gb|AAF22524.1
          Length = 399

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +2

Query: 392 YKKRRLEHEESEDKITVTDKSMNSITHSGEDSKNRKKLKQMLKMKEIL---XLN*SNTRL 562
           Y+K+ L+H+E E ++    +++       E +K    LK +  + +I+        N RL
Sbjct: 18  YRKKLLQHKELESRVRTARENLRGA--KKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERL 75

Query: 563 ILKSTXAPK 589
           I+K++  P+
Sbjct: 76  IVKASSGPR 84


>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 500

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = +2

Query: 395 KKRRLEHEESEDKITVTDKSMNSITHSGEDSKNRKKLKQMLKMKEILXLN*SNTRLILKS 574
           KK+  E E+ +DK T+  K M  + + GE+ +++  L  +L   + L       R+I+ +
Sbjct: 311 KKKEEEEEDGDDKNTIEKKMM--MKNEGENKESKVTLSGLLNFIDGLWSACGGERIIVFT 368

Query: 575 T 577
           T
Sbjct: 369 T 369


>At3g19250.1 68416.m02442 hypothetical protein
          Length = 398

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
 Frame = -3

Query: 514 HLFE-LLSVF*VFSTVSYR-VHGFICNC--NLVLRFFMFKSPFFITACHSFTGLYLSFH- 350
           HL+  LL +F +F   S+  +    CN   ++ L+   F++PF     HSF    L F+ 
Sbjct: 164 HLYTPLLDLFNIFPRDSHSAIDESFCNLAFDVFLKLDTFENPFASPESHSFQDTQLCFYQ 223

Query: 349 LSVRLTLKLIRNSFVVKLI 293
           L+ +L  ++ ++   V+L+
Sbjct: 224 LADKLDTRIRKSKSRVRLL 242


>At5g56360.1 68418.m07034 calmodulin-binding protein similar to
           alpha glucosidase II beta subunit from GI:2104691 [Mus
           musculus]
          Length = 647

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 398 KRRLEHEESEDKITVTDKSMNSITHSGEDSKNRKKLKQMLKMKE 529
           +R+ E   SED  + TD+S N  +   E+S   KK++  +  K+
Sbjct: 303 ERKEESTSSEDSSSPTDESQNDGSAEKEESDEVKKVEDFVTEKK 346


>At5g41020.1 68418.m04986 myb family transcription factor contains
           Pfam profile: PF00249 Myb DNA binding domain
          Length = 588

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +2

Query: 395 KKRRLEHEESEDKITVTDKSMNSITHSGEDSKNRKKLKQMLKMKEI 532
           KK+R + ++SED  T  +  +NS     +D+K R+K K+  K  E+
Sbjct: 211 KKKRKKKKQSEDSET-EENGLNST----KDAKKRRKKKKKKKQSEV 251


>At4g31550.1 68417.m04479 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 325

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +2

Query: 392 YKKRRLEHEESEDKITVTDKSMNSITHSGEDSKNRKK 502
           Y+KR LEHE SE        S     H  +  KNR K
Sbjct: 193 YRKRCLEHEHSESFSGKVSGSAYGKCHCKKSRKNRMK 229


>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
           p42D, putative similar to 26S proteasome regulatory
           complex subunit p42D [Drosophila melanogaster]
           gi|6434958|gb|AAF08391
          Length = 399

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +2

Query: 392 YKKRRLEHEESEDKITVTDKSMNSITHSGEDSKNRKKLKQMLKMKEIL---XLN*SNTRL 562
           Y+K+ L H+E E ++    +++ +     E +K    LK +  + +I+        N RL
Sbjct: 18  YRKKLLHHKELESRVRTARENLRAA--KKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERL 75

Query: 563 ILKSTXAPK 589
           I+K++  P+
Sbjct: 76  IVKASSGPR 84


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,230,033
Number of Sequences: 28952
Number of extensions: 191443
Number of successful extensions: 479
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)