Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060255.seq
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 117 1e-27
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 56 4e-09
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 45 8e-06
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 41 2e-04
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 40 4e-04
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 36 0.007
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 33 0.048
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 32 0.063
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 29 0.59
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 29 0.59
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 27 2.4
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 26 5.5
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 25 7.3
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 7.3
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 25 9.6
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 25 9.6
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 117 bits (282), Expect = 1e-27
Identities = 58/126 (46%), Positives = 74/126 (58%)
Frame = +3
Query: 255 WDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYV 434
W + +L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV
Sbjct: 74 WKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYV 133
Query: 435 QXGVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXGVXAKRCPTSXQAIVHINNXPAIRR 614
VK +G++ PTPIQ Q WP+AMS R + ++ G K AIVHIN P +
Sbjct: 134 LKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATG-SGKTLSYCLPAIVHINAQPLLSP 192
Query: 615 GDGPIL 632
GDGPI+
Sbjct: 193 GDGPIV 198
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 56.0 bits (129), Expect = 4e-09
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Frame = +3
Query: 264 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQX 440
++ + F K+FY + SP EV+E R + + + + G++ P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 441 GVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXGVXAKRCPTSXQAIVHINNXPAIRRGD 620
+ ++GY++PT IQAQ P S R + VA+ G K HI + ++ G+
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTG-SGKTIAFLLPMFRHIKDQRPLKTGE 490
Query: 621 GPI 629
GPI
Sbjct: 491 GPI 493
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 45.2 bits (102), Expect = 8e-06
Identities = 21/87 (24%), Positives = 45/87 (51%)
Frame = +3
Query: 348 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSERI*LA 527
+ ++ +++ G ++ NP++ +EEA P + +K + YKEP+ IQ P+ + + +
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 528 VAQXGVXAKRCPTSXQAIVHINNXPAI 608
+A+ G K I+ I+ P +
Sbjct: 292 IAETG-SGKTAAFIIPLIIAISKLPPL 317
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = +3
Query: 393 PIQYFEEANFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXG 542
PI F+E + ++ G+K YKEPTPIQA WP ++ R + +A+ G
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETG 212
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 39.5 bits (88), Expect = 4e-04
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +3
Query: 363 VTVSGVEVHNPIQYFEEANFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXG 542
V VSG ++ P+ F ++ +K GY +PTP+Q PI S R +A AQ G
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 35.5 bits (78), Expect = 0.007
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +3
Query: 405 FEEANFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXGVXAKRCPTSXQAIV 584
F+E D + + +G+K PTPIQ + P+ +++R + +AQ G K + I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTG-SGKTAAFALPVIQ 106
Query: 585 HINNXPA 605
+ N P+
Sbjct: 107 ELWNNPS 113
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 32.7 bits (71), Expect = 0.048
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +3
Query: 339 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSERI 518
+E N E+T S E N + FEE N + + G+ GY+ P+ +Q++ R
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 519 *LAVAQXG 542
+A AQ G
Sbjct: 61 VIAQAQSG 68
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 32.3 bits (70), Expect = 0.063
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 405 FEEANFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXG 542
FE+ + G+ G++ P+PIQ + PIA+S R LA A+ G
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNG 91
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 29.1 bits (62), Expect = 0.59
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +3
Query: 405 FEEANFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSER 515
F+ N +++ V G+K+ TP+QA P+ + +
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNK 39
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 29.1 bits (62), Expect = 0.59
Identities = 9/37 (24%), Positives = 23/37 (62%)
Frame = +2
Query: 158 RLDLATVAVDLEDLEDLVGKKNSLEVRTCVAQMGFCF 268
+ D++ + + + + +NS+++ +C+ Q+GFCF
Sbjct: 274 KFDISLIMALISAIINKTASQNSIKIISCLYQVGFCF 310
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/56 (21%), Positives = 29/56 (51%)
Frame = +3
Query: 375 GVEVHNPIQYFEEANFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXG 542
G+ + + F + N +Q + +++PT +Q++ P+A+ + +A A+ G
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTG 61
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 456 GYKEPTPIQAQGWPIAMSERI*LAVAQXG 542
G+K PTPIQ + P+ + R + +A+ G
Sbjct: 88 GFKAPTPIQRKTIPLLLEGRDVVGMARTG 116
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 7.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 258 DSVSLQPFNKN----FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQ 401
D V L PF K FYDP P LK + +E+ + + V +H P+Q
Sbjct: 112 DVVEL-PFTKGGYGGFYDPRPGCLKFTTHEINVSYTDTSIPV----IHIPVQ 158
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 7.3
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -2
Query: 476 RRRFFVTHCLY--TXLHIIRKICFFKVLNRIMNLNATYSYLVIISV 345
RR T CLY + L +I K C + I+ +NA ++L +SV
Sbjct: 524 RRLNIHTTCLYRDSNLQVIIKSCIINSVKSIILINAGLAHLGKVSV 569
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = +3
Query: 348 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQXGVKTMGYKEPTPIQAQG 491
R + +TV+G+ V + + Y PD+ Q G+ Y + + +G
Sbjct: 153 RYDDNITVAGINVQDSLSYSHYQALPDF-QFGITLKEYVPSSMLPYKG 199
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 277 LSTKTFMIHILQFSKDHHMKSKSTEIIT 360
+STK H+L S D H+ ++ E++T
Sbjct: 340 ISTKALR-HVLNLSYDFHLNKRAGEVLT 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,244,990
Number of Sequences: 5004
Number of extensions: 41089
Number of successful extensions: 100
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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