Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060255.seq
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)              91   1e-18
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)                  60   1e-09
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)               57   1e-08
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)                  56   3e-08
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)                  56   3e-08
SB_43842| Best HMM Match : RNB (HMM E-Value=0)                         47   1e-05
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)            47   2e-05
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)                44   1e-04
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.017
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_17563| Best HMM Match : DEAD (HMM E-Value=0)                        30   1.9  
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)                         30   1.9  
SB_2247| Best HMM Match : DEAD (HMM E-Value=0)                         30   1.9  
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)              29   3.3  
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)                   28   5.8  
SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)                  28   7.7  

>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 44/128 (34%), Positives = 68/128 (53%)
 Frame = +3

Query: 249 PRWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 428
           P    +  +PFNKNFY+ HP + K+S  E+++ R    + VSG     P   F    F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526

Query: 429 YVQXGVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXGVXAKRCPTSXQAIVHINNXPAI 608
            +   ++ + Y +PT IQ Q  PIA+S R  + +A+ G   K       A+VHI + P +
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTG-SGKTAAFLWPALVHIMDQPEL 585

Query: 609 RRGDGPIL 632
           + GDGPI+
Sbjct: 586 QVGDGPIV 593


>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
          Length = 690

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 27/56 (48%), Positives = 37/56 (66%)
 Frame = +3

Query: 321 RSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQXGVKTMGYKEPTPIQAQ 488
           R  +EV+ YR + ++TV+G  V  P+  FEE+ FPDY+Q   K  G+ EPT IQAQ
Sbjct: 57  RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112


>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
 Frame = +3

Query: 261 SVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQ 437
           +V  QPF K+FY   P + K +P E +E+R + E + V G     P++ + +      + 
Sbjct: 58  TVVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKIL 117

Query: 438 XGVKTMGYKEPTPIQAQGWPIAMSERI*LAV 530
             +K   Y++PTPIQAQ  P+ MS R  +A+
Sbjct: 118 DVLKKNSYEKPTPIQAQAIPVIMSGRDMIAI 148


>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
          Length = 428

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 30/90 (33%), Positives = 46/90 (51%)
 Frame = +3

Query: 345 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSERI*L 524
           +R +  ++  G  +  PI+ ++EA  PD +   V  +GYK+PTPIQ Q  PI +  R  +
Sbjct: 83  FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDII 142

Query: 525 AVAQXGVXAKRCPTSXQAIVHINNXPAIRR 614
            VA+ G   K    +   +V I   P I R
Sbjct: 143 GVAETG-SGKTAAFAIPLLVWIMGLPKIER 171


>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
          Length = 500

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 30/99 (30%), Positives = 49/99 (49%)
 Frame = +3

Query: 294 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQXGVKTMGYKEPT 473
           Y  HPT+   +  +V++ R+  E+ V G  V +P+  F   +F + +   +   GY  PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220

Query: 474 PIQAQGWPIAMSERI*LAVAQXGVXAKRCPTSXQAIVHI 590
           PIQ Q  P+ +S R  +  A  G   K  P+S +  V +
Sbjct: 221 PIQMQVLPVLLSGRDVMVCASTG-SGKLLPSSPEMGVQV 258


>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
          Length = 1238

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 30/117 (25%), Positives = 51/117 (43%)
 Frame = +3

Query: 279 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQXGVKTMG 458
           F  ++YD +  V + S   V+E R  + + + G +   PI+ F + N P  +   +    
Sbjct: 32  FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91

Query: 459 YKEPTPIQAQGWPIAMSERI*LAVAQXGVXAKRCPTSXQAIVHINNXPAIRRGDGPI 629
           ++ PTPIQ Q     MS R  + +A+ G   K    S    + +        GD P+
Sbjct: 92  FQVPTPIQMQSLSCVMSGRDIIGLAETG-SGKTLAYSLPLCMLLRTKAPSNPGDTPV 147


>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
          Length = 1058

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
 Frame = +3

Query: 333 EVEEYRNNHEVTVSGVEVHNPIQYF----EEANFPDYVQXGVKTMGYKEPTPIQAQGWPI 500
           ++  +R+   + V G +V +P++ F    E   FPDY+   V+  GY  PTPIQ Q  P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196


>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 25/61 (40%), Positives = 32/61 (52%)
 Frame = +3

Query: 360 EVTVSGVEVHNPIQYFEEANFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQX 539
           EV VSG      I  FEEAN  +     V+   YK+PTP+Q    PI ++ R  +A AQ 
Sbjct: 698 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQT 757

Query: 540 G 542
           G
Sbjct: 758 G 758


>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
          Length = 185

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 25/61 (40%), Positives = 32/61 (52%)
 Frame = +3

Query: 360 EVTVSGVEVHNPIQYFEEANFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQX 539
           EV VSG      I  FEEAN  +     V+   YK+PTP+Q    PI ++ R  +A AQ 
Sbjct: 121 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQT 180

Query: 540 G 542
           G
Sbjct: 181 G 181


>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 797

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = +3

Query: 369 VSGVEVHNPIQYFEEANFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXG 542
           VSG      I  F E  F + +   +   GY+ PTP+Q    PI M+ R  +A AQ G
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMACAQTG 526


>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 396  IQYFEEANFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXG 542
            I  FE+ +  + +   V   GYK+PTP+Q    PI   +R  +A AQ G
Sbjct: 874  ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTG 922


>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 480

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +3

Query: 381 EVHNPIQYFEEANFPDYVQXGVKTMGYKEPTPIQAQGW 494
           ++H P++   +  FP Y +       Y  P P QA  W
Sbjct: 6   DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43


>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 439

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 405 FEEANFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXG 542
           FE+      +  G+   G+ +P+PIQ +  P+A++ R  LA A+ G
Sbjct: 49  FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNG 94


>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
          Length = 675

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 291 FYDPHPTVLKRSPYEVEEYRNN--HEVTVSGVEVHNPIQYFEEANFPDY 431
           + D    VL     E EE  NN  H++ +  + +HNP  YFE+ +  DY
Sbjct: 217 YRDEDDGVLVPIEQEAEEEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264


>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 439

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 405 FEEANFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXG 542
           FE+      +  G+   G+ +P+PIQ +  P+A++ R  LA A+ G
Sbjct: 49  FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNG 94


>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
          Length = 490

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +3

Query: 357 HEVTVSGVEVHNPI---QYFEEANFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSE 512
           HEV V   +  +P+   + FEE      ++ GV  MG+ +P+ IQ    P+ +++
Sbjct: 86  HEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLAD 140


>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
          Length = 96

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = +3

Query: 444 VKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXG---VXAKRCPTSXQAIVHINNXPAIR 611
           V  +G+  PTPIQA   P+A+  +   A A  G     A   P   + +      PAIR
Sbjct: 25  VNELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLYRPTQSPAIR 83


>SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 241 CSDLQRILFSHQILQILQIYCHRC-QIETN 155
           CS    +L   +IL+   +YC +C Q ETN
Sbjct: 14  CSLCSEVLTEPKILRCFHVYCQKCLQAETN 43


>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
          Length = 401

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 172 CQIETNYRRICCLLQIWN-HRFHGYYSS 92
           C +  +YRR CC L +W  H  + Y+SS
Sbjct: 218 CCVRVDYRRKCC-LHVWRVHTTNTYWSS 244


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,613,408
Number of Sequences: 59808
Number of extensions: 298053
Number of successful extensions: 758
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)