Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060255.seq
         (657 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    40   5e-05
EF519370-1|ABP68479.1|  452|Anopheles gambiae LRIM1 protein.           26   0.91 
AY805323-1|AAV66543.1|  459|Anopheles gambiae beta subunit-GABA-...    23   8.5  
AF043440-1|AAC05665.1|  234|Anopheles gambiae putative pupal-spe...    23   8.5  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 40.3 bits (90), Expect = 5e-05
 Identities = 21/61 (34%), Positives = 32/61 (52%)
 Frame = +3

Query: 360 EVTVSGVEVHNPIQYFEEANFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQX 539
           +V VSG    + ++ FE +   + V   V+   Y +PTPIQ    PI ++ R  +A AQ 
Sbjct: 161 QVRVSGENPPDHVESFERSGLREEVMTNVRKSSYTKPTPIQRYAIPIILNGRDLMACAQT 220

Query: 540 G 542
           G
Sbjct: 221 G 221


>EF519370-1|ABP68479.1|  452|Anopheles gambiae LRIM1 protein.
          Length = 452

 Score = 26.2 bits (55), Expect = 0.91
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 113 TVVPNLEEATNSAIIRLDLATVAVDLEDLEDLVGKKNSLE 232
           T++ +L+E   S +  LDL    +D  +L +L    +SLE
Sbjct: 140 TMLRDLDEGCRSRVQYLDLKLNEIDTVNLAELAASSDSLE 179


>AY805323-1|AAV66543.1|  459|Anopheles gambiae beta
           subunit-GABA-A-gated chloride channelprotein.
          Length = 459

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +3

Query: 303 HPTVLKRSPYEVEEYRNNHEVTVSGVEVH---NPIQYFEEANFPDYVQXGVKTMGYKE 467
           +P   +    E+E Y      TVS V ++    PI+  EEA  P +   G +T   KE
Sbjct: 149 YPLDSQNCTVEIESYG----YTVSDVVMYWRSTPIRGVEEAELPQFTIIGYETNDRKE 202


>AF043440-1|AAC05665.1|  234|Anopheles gambiae putative
           pupal-specific cuticular proteinCP2d protein.
          Length = 234

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 312 VLKRSPYEVEEYRNNHEVTVSGVEVHNPIQY 404
           V++R P  V+  +  H+V    V VH P+ +
Sbjct: 139 VVRREPSAVKIAQPVHKVIAQPVHVHAPVAH 169


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 567,021
Number of Sequences: 2352
Number of extensions: 10354
Number of successful extensions: 27
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65232180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)