Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060255.seq
(657 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 119 2e-27
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 103 1e-22
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 103 1e-22
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 87 1e-17
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 77 1e-14
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 77 1e-14
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 71 7e-13
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 71 7e-13
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 71 7e-13
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 66 1e-11
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 52 3e-07
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 48 7e-06
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 45 5e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 42 4e-04
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 42 5e-04
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 42 5e-04
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 40 0.001
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 40 0.001
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 40 0.001
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 39 0.003
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 38 0.006
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 38 0.008
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 35 0.055
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 33 0.22
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 31 0.67
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 31 0.67
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 30 1.2
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 30 1.6
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 29 3.6
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 29 3.6
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 29 3.6
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 29 3.6
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 29 3.6
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 29 3.6
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 29 3.6
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 29 3.6
At2g33420.1 68415.m04096 expressed protein 28 4.8
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 6.3
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 27 8.3
At2g25460.1 68415.m03049 expressed protein 27 8.3
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 27 8.3
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 119 bits (286), Expect = 2e-27
Identities = 60/130 (46%), Positives = 76/130 (58%), Gaps = 1/130 (0%)
Frame = +3
Query: 246 SPR-WDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 422
SPR D L PF KNFY P V + EVEEYR E+TV G ++ P++ F + F
Sbjct: 47 SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGF 106
Query: 423 PDYVQXGVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXGVXAKRCPTSXQAIVHINNXP 602
PDYV VK G+ EPTPIQ+QGWP+AM R + +A+ G K AIVH+N P
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETG-SGKTLSYLLPAIVHVNAQP 165
Query: 603 AIRRGDGPIL 632
+ GDGPI+
Sbjct: 166 MLAHGDGPIV 175
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 103 bits (246), Expect = 1e-22
Identities = 48/128 (37%), Positives = 76/128 (59%)
Frame = +3
Query: 249 PRWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 428
P+ + +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 429 YVQXGVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXGVXAKRCPTSXQAIVHINNXPAI 608
+ + +G+ EPTPIQAQGWP+A+ R + +A+ G K A+VH++ P +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETG-SGKTLAYLLPALVHVSAQPRL 233
Query: 609 RRGDGPIL 632
+ DGPI+
Sbjct: 234 GQDDGPIV 241
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 103 bits (246), Expect = 1e-22
Identities = 48/128 (37%), Positives = 76/128 (59%)
Frame = +3
Query: 249 PRWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 428
P+ + +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 429 YVQXGVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXGVXAKRCPTSXQAIVHINNXPAI 608
+ + +G+ EPTPIQAQGWP+A+ R + +A+ G K A+VH++ P +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETG-SGKTLAYLLPALVHVSAQPRL 233
Query: 609 RRGDGPIL 632
+ DGPI+
Sbjct: 234 GQDDGPIV 241
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 87.0 bits (206), Expect = 1e-17
Identities = 41/123 (33%), Positives = 66/123 (53%)
Frame = +3
Query: 261 SVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQX 440
S+ +P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F +
Sbjct: 182 SIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMS 241
Query: 441 GVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXGVXAKRCPTSXQAIVHINNXPAIRRGD 620
+K Y++PT IQ Q PI +S R + +A+ G K IVHI + P ++R +
Sbjct: 242 AIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTG-SGKTAAFVLPMIVHIMDQPELQRDE 300
Query: 621 GPI 629
GPI
Sbjct: 301 GPI 303
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 77.0 bits (181), Expect = 1e-14
Identities = 41/122 (33%), Positives = 61/122 (50%)
Frame = +3
Query: 264 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQXG 443
+ +PF KNFY + + + V YR E+ V G +V PIQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 444 VKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXGVXAKRCPTSXQAIVHINNXPAIRRGDG 623
+K + Y++P PIQAQ PI MS R + VA+ G K + HI + P + GDG
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTG-SGKTLGFVLPMLRHIKDQPPVEAGDG 469
Query: 624 PI 629
PI
Sbjct: 470 PI 471
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 76.6 bits (180), Expect = 1e-14
Identities = 40/122 (32%), Positives = 61/122 (50%)
Frame = +3
Query: 264 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQXG 443
+ +PF KNFY + + + EV YR E+ V G +V PI+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 444 VKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXGVXAKRCPTSXQAIVHINNXPAIRRGDG 623
+K + Y++P PIQ Q PI MS R + VA+ G K + HI + P + GDG
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTG-SGKTLGFVLPMLRHIKDQPPVEAGDG 602
Query: 624 PI 629
PI
Sbjct: 603 PI 604
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 70.9 bits (166), Expect = 7e-13
Identities = 35/81 (43%), Positives = 45/81 (55%)
Frame = +3
Query: 300 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQXGVKTMGYKEPTPI 479
P P+ S E Y HE+TVSG +V P+ FE FP + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 480 QAQGWPIAMSERI*LAVAQXG 542
QAQ WPIAM R +A+A+ G
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTG 205
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 70.9 bits (166), Expect = 7e-13
Identities = 35/81 (43%), Positives = 45/81 (55%)
Frame = +3
Query: 300 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQXGVKTMGYKEPTPI 479
P P+ S E Y HE+TVSG +V P+ FE FP + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 480 QAQGWPIAMSERI*LAVAQXG 542
QAQ WPIAM R +A+A+ G
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTG 205
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 70.9 bits (166), Expect = 7e-13
Identities = 35/81 (43%), Positives = 45/81 (55%)
Frame = +3
Query: 300 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQXGVKTMGYKEPTPI 479
P P+ S E Y HE+TVSG +V P+ FE FP + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 480 QAQGWPIAMSERI*LAVAQXG 542
QAQ WPIAM R +A+A+ G
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTG 205
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 66.5 bits (155), Expect = 1e-11
Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Frame = +3
Query: 282 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQXGVK 449
NK+ PH P V SP E+ YR HEVT +G + P FE + P + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 450 TMGYKEPTPIQAQGWPIAMSERI*LAVAQXG 542
+ G+ PTPIQAQ WPIA+ R +A+A+ G
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTG 482
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 52.0 bits (119), Expect = 3e-07
Identities = 27/84 (32%), Positives = 44/84 (52%)
Frame = +3
Query: 291 FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQXGVKTMGYKEP 470
++ P V K S +++ R +TV+G ++ PI+ F + FP + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 471 TPIQAQGWPIAMSERI*LAVAQXG 542
TPIQ QG P+ +S R + +A G
Sbjct: 121 TPIQVQGLPVVLSGRDMIGIAFTG 144
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 47.6 bits (108), Expect = 7e-06
Identities = 25/83 (30%), Positives = 43/83 (51%)
Frame = +3
Query: 294 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQXGVKTMGYKEPT 473
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 474 PIQAQGWPIAMSERI*LAVAQXG 542
PIQ QG P+ ++ R + +A G
Sbjct: 171 PIQVQGLPVILAGRDMIGIAFTG 193
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/102 (21%), Positives = 52/102 (50%)
Frame = +3
Query: 237 EHASPRWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEA 416
E A+ +DS ++ ++++ D + + + +R + ++ G + P++ +EE+
Sbjct: 262 EEAADTYDSFDMR-VDRHWSDKRLEEMTERDWRI--FREDFNISYKGSRIPRPMRSWEES 318
Query: 417 NFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXG 542
+ V+ GYK+P+PIQ P+ + +R + +A+ G
Sbjct: 319 KLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETG 360
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +3
Query: 348 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQXGVKTMGYKEPTPIQAQGWPIAMSER 515
R + + VSG + P++ F E + Y+ + +G+KEPTPIQ Q PI +S R
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 516 I*LAVAQXG 542
A A G
Sbjct: 180 ECFACAPTG 188
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +3
Query: 363 VTVSGVEVHNPIQYFEEANFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXG 542
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ER +A AQ G
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +3
Query: 363 VTVSGVEVHNPIQYFEEANFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXG 542
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ER +A AQ G
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +3
Query: 444 VKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXG 542
V + G+ P+PIQAQ WPIAM R +A+A+ G
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTG 276
Score = 31.1 bits (67), Expect = 0.67
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 339 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 428
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Frame = +3
Query: 255 WD--SVSLQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYFEEANFP 425
WD + PF + +P P ++ + + + + SG V P+ F E +
Sbjct: 108 WDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLG 167
Query: 426 DYVQXGVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXG 542
+ + ++ Y +PTP+Q PI + R +A AQ G
Sbjct: 168 EALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTG 206
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 39.9 bits (89), Expect = 0.001
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Frame = +3
Query: 333 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQXGVKTMGYKEPTPIQAQGWPIAM 506
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 507 SERI*LAVAQXGVXAKRCPTSXQAIVHI 590
R + +A+ G K AI+H+
Sbjct: 150 DGRDLIGIAKTG-SGKTLAFGIPAIMHV 176
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = +3
Query: 366 TVSGVEVHNPIQYFEEANFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSER 515
TV GV H F E N + +T+GYK+PTPIQA P+A++ R
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGR 205
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 37.9 bits (84), Expect = 0.006
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Frame = +3
Query: 255 WD--SVSLQPF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFP 425
WD PF N DP + + E Y + + SG V P+ F E +
Sbjct: 96 WDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLG 154
Query: 426 DYVQXGVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXG 542
+ + ++ Y +PTP+Q PI + R +A AQ G
Sbjct: 155 EALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTG 193
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 37.5 bits (83), Expect = 0.008
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +3
Query: 324 SPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANFPDYVQXGVKTMGYKEPTPIQAQGWP 497
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 498 IAMSERI*LAVAQXG 542
A++ + LA A G
Sbjct: 143 AALTGKSLLASADTG 157
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 34.7 bits (76), Expect = 0.055
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +3
Query: 405 FEEANFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXG 542
FE N V +K GYK PTPIQ + P+ +S +A+A+ G
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTG 75
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 32.7 bits (71), Expect = 0.22
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 393 PIQYFEEANFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXG 542
PI+ F++ D V GV GYK+P+ IQ + + R +A AQ G
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSG 69
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 31.1 bits (67), Expect = 0.67
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 405 FEEANFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXG 542
FE+ + G+ G++ P+PIQ + PIA++ R LA A+ G
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNG 178
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 31.1 bits (67), Expect = 0.67
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 405 FEEANFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXG 542
FE+ + G+ G++ P+PIQ + PIA++ R LA A+ G
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNG 178
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +3
Query: 381 EVHNPIQYFEEANFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXG 542
E + ++ F E + + + +G+K P+ IQA+ P A+ + + +AQ G
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTG 56
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 188 LEDLEDLVGKKNSLEVRTCVAQMGFCFTPTF 280
+ D++ +GK V C A+MG CF+ T+
Sbjct: 530 VSDIKTWMGKFKDKNVAKCAARMGLCFSSTY 560
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 28.7 bits (61), Expect = 3.6
Identities = 22/90 (24%), Positives = 34/90 (37%)
Frame = +3
Query: 273 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQXGVKT 452
+P K T K EVE+ ++ + + + FE + D +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 453 MGYKEPTPIQAQGWPIAMSERI*LAVAQXG 542
MG+ T IQA+ P M L A+ G
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTG 201
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 441 GVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXG 542
G+ G+++P+PIQ + PIA++ LA A+ G
Sbjct: 138 GIYEKGFEKPSPIQEESIPIALTGSDILARAKNG 171
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 441 GVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXG 542
G+ G+++P+PIQ + PIA++ LA A+ G
Sbjct: 138 GIYEKGFEKPSPIQEESIPIALTGSDILARAKNG 171
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 441 GVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXG 542
G+ G+++P+PIQ + PIA++ LA A+ G
Sbjct: 168 GIYEKGFEKPSPIQEESIPIALTGSDILARAKNG 201
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 294 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQXGVKTMGYKEP 470
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 471 TPIQAQGWPIAMSE 512
+P++ + P+ S+
Sbjct: 232 SPVRDEYAPVIFSQ 245
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 294 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQXGVKTMGYKEP 470
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 471 TPIQAQGWPIAMSE 512
+P++ + P+ S+
Sbjct: 255 SPVRDEYAPVIFSQ 268
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 294 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQXGVKTMGYKEP 470
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 471 TPIQAQGWPIAMSE 512
+P++ + P+ S+
Sbjct: 232 SPVRDEYAPVIFSQ 245
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 405 FEEANFPDYVQXGVKTMGYKEPTPIQAQGWPIAMSERI*LAVAQXG 542
FE ++ K +G ++PTP+Q P ++ R L +AQ G
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTG 105
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 27 SKRIHSLNKHLQLNPKI 77
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 27 SKRIHSLNKHLQLNPKI 77
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 27.5 bits (58), Expect = 8.3
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 453 MGYKEPTPIQAQGWPIAMSERI*LAVAQXGVXAKRCPTSXQAIVHI-NNXPAIRRGDG 623
MG++ PT +QAQ P+ +S R L A G K I H+ + P + R G
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGT-GKTIAYLAPLIHHLQGHSPKVDRSHG 104
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 27.5 bits (58), Expect = 8.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 163 ETNYRRICCLLQIWNHRFHGYY 98
E + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/54 (22%), Positives = 26/54 (48%)
Frame = +3
Query: 243 ASPRWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQY 404
A+ W++ +QP PHPT + +Y N +++ + + +NP+ +
Sbjct: 263 ANVSWNNPIMQPTGFYCAPPHPTPPPTNNLGYIQYMNGFDLSGTNISGYNPLAW 316
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,652,403
Number of Sequences: 28952
Number of extensions: 208230
Number of successful extensions: 595
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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