Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060252.seq
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    23   2.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.3  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            23   3.1  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   3.1  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   7.1  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.4  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.4  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.4  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.4  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.4  

>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
 Frame = -1

Query: 142 STTRSPLTRSFLIK*STK--FRPM----KPHPPSIKTRGFKLSPVVS 20
           +TTR+ LT  F  K STK   +P+     P  P   T G  L   VS
Sbjct: 167 TTTRTTLTTKFTTKPSTKPTNKPVVVTKPPQAPPFATVGANLQATVS 213


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +2

Query: 374  AKHCARMKVPRLVEISSGQMCSNDKPQKEDCSIDP 478
            +  C     P L  ++ G     D P +EDC+  P
Sbjct: 973  SNRCCGGSFPLLRSLNRGLGLIPDNPSREDCTKPP 1007


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = -2

Query: 333 ASV*PPRVSLAQFTTS-PHGASSPGSNV 253
           AS+ P     A +    PHG  SPG NV
Sbjct: 85  ASISPQNTPPAGYPMDVPHGMGSPGVNV 112


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = -2

Query: 333 ASV*PPRVSLAQFTTS-PHGASSPGSNV 253
           AS+ P     A +    PHG  SPG NV
Sbjct: 85  ASISPQNTPPAGYPMDVPHGMGSPGVNV 112


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 323 DLREFRSHNSLPAPMARRLL 264
           D+ E  SH S+PA   R+ L
Sbjct: 329 DVEEMLSHQSMPATGERQTL 348


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 63  LVLKLVVLNYH 31
           +VL +VVLNYH
Sbjct: 289 VVLTVVVLNYH 299


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 63  LVLKLVVLNYH 31
           +VL +VVLNYH
Sbjct: 289 VVLTVVVLNYH 299


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 63  LVLKLVVLNYH 31
           +VL +VVLNYH
Sbjct: 289 VVLTVVVLNYH 299


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 63  LVLKLVVLNYH 31
           +VL +VVLNYH
Sbjct: 289 VVLTVVVLNYH 299


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 63  LVLKLVVLNYH 31
           +VL +VVLNYH
Sbjct: 289 VVLTVVVLNYH 299


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,287
Number of Sequences: 336
Number of extensions: 3610
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)